Gene
| Gene Model ID | pfu_aug2.0_695.1_17738 |
|---|---|
| Locus | scaffold695.1 : 138415 ... 155223 : - |
| To GenomeBrowser | scaffold695.1:138415..155223 |
| Genes list of scaffold | scaffold695.1 |
| Synonym | pfu_aug1.0_17818.1_61751 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glycine receptor subunit alpha-4 | GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_695.1_17738.t1 | 1 | 1 | Neur_chan_LBD | 8 | 148 | 1.8e-33 | 115.5 | 3.8e-37 | 2.8e-33 | 114.8 |
| pfu_aug2.0_695.1_17738.t1 | 2 | 1 | Neur_chan_memb | 201 | 299 | 3.7e-36 | 125.2 | 7.1e-35 | 5.3e-31 | 108.3 |
| pfu_aug2.0_695.1_17738.t1 | 2 | 2 | Neur_chan_memb | 361 | 386 | 3.7e-36 | 125.2 | 6.4e-08 | 0.00047 | 20.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_695.1_17738.t1 | gi|676492432|ref|XP_009065915.1| | hypothetical protein LOTGIDRAFT_53634, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_695.1_17738.t1 | gi|524871318|ref|XP_005092432.1| | PREDICTED: glycine receptor subunit alpha-2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_695.1_17738.t1 | gi|700434543|ref|XP_009956225.1| | PREDICTED: glycine receptor subunit alpha-4 [Leptosomus discolor] | 0.0 |
| pfu_aug2.0_695.1_17738.t1 | gi|512020160|ref|XP_004827326.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_695.1_17738.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_695.1_17738.t1 atgggacacctgggcaggtctccaccaaatgaggacgaccgtgatggaccgaccatcgttgacgtagatctagaagtgac gagttttgattctgtcaatgaagcaagtatggattttacaatagcgatccggatgcacctcatttggaatgatcccagga tcttagataaagctaaagtcttcccgaagaaaacaaactttgttgaagtagattcctacaaacttaagaacttttgggcc ccggatatatacttccccaatgaaaagaagggcgagttccataacgtgatgaatgccaacaaaatgatgaagttatacaa gaacggaacggtatcctatacatctcgactgtcgttgaccttgagttgcccgatgaatctccgaagttatcccttcgaca aacagacctgctctatcatgattgaaagttagcaccatcaagctgctgtcaaactggggaaattcgagctaccaacattt cagatcacagacgatacaaactattcaaacgccgtcgtaaactacactctaagaggtgaattcagtttcctgaaggccga tttccacttaatcagaagaataggttactacttgatacagatgtatatacccagtctcctcattgtcatgttatcatggg tctcattctggcttaatgtcaactcggttccgggtagagtgtctcttggtgtactttcggttttaacaatctctacccag agttcaacagtgaatgcgtcacttcctcgagtttcctacatcaaggctatagacatttggatgacaacttgcttaatttt tgtatttgccgcacttttggagttctcggttgctaatgtcataagtagacggggaagtgggcatagtcatttagttcaaa gaattctgcgcatgaccaaacggaaatggaggggaagagaatatgggatagaaaggagtgaagaagaaaaaggattaagg aaaagaggagggaagaaagagaaaaatggcaatactaaagatattattgtaaatatggatggcactgtagatttcaagga ctccaagtcggaggaaaaacctttattttcccacggtcctttgtacgcgatgtacatagacagcgcatgtcgagtactgt ttccggttgtattcgccatctttaacattgtatactgggtgcactttttgaatataacagactatatgaaagaaaaggat attggtcaaacgtcctctccatctgtttcccataatgcaagtttgaaaatggcgacaggaaatggaacataccgttga |
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Protein
| Protein ID | pfu_aug2.0_695.1_17738.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_695.1_17738.t1 MGHLGRSPPNEDDRDGPTIVDVDLEVTSFDSVNEASMDFTIAIRMHLIWNDPRILDKAKVFPKKTNFVEVDSYKLKNFWA PDIYFPNEKKGEFHNVMNANKMMKLYKNGTVSYTSRLSLTLSCPMNLRSYPFDKQTCSIMIESXHHQAAVKLGKFELPTF QITDDTNYSNAVVNYTLRGEFSFLKADFHLIRRIGYYLIQMYIPSLLIVMLSWVSFWLNVNSVPGRVSLGVLSVLTISTQ SSTVNASLPRVSYIKAIDIWMTTCLIFVFAALLEFSVANVISRRGSGHSHLVQRILRMTKRKWRGREYGIERSEEEKGLR KRGGKKEKNGNTKDIIVNMDGTVDFKDSKSEEKPLFSHGPLYAMYIDSACRVLFPVVFAIFNIVYWVHFLNITDYMKEKD IGQTSSPSVSHNASLKMATGNGTYR |
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