Gene
| Gene Model ID | pfu_aug2.0_7.1_23203 |
|---|---|
| Locus | scaffold7.1 : 72996 ... 135785 : - |
| To GenomeBrowser | scaffold7.1:72996..135785 |
| Genes list of scaffold | scaffold7.1 |
| Synonym | pfu_aug1.0_852.1_65669 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription initiation protein spt3 homolog | GO:0016570 GO:0070461 GO:0097659 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_7.1_23203.t1 | 1 | 1 | TFIID-18kDa | 33 | 121 | 9.6e-27 | 92.6 | 3.5e-30 | 2.6e-26 | 91.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_7.1_23203.t1 | gi|676461547|ref|XP_009055978.1| | hypothetical protein LOTGIDRAFT_119719 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_7.1_23203.t1 | gi|50540318|ref|NP_001002625.1| | transcription initiation protein SPT3 homolog [Danio rerio] | 0.0 |
| pfu_aug2.0_7.1_23203.t1 | gi|597776857|ref|XP_007252104.1| | PREDICTED: transcription initiation protein SPT3 homolog [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_7.1_23203.t1 | gi|157279925|ref|NP_001098478.1| | transcription initiation protein SPT3 homolog [Bos taurus] | 0.0 |
| pfu_aug2.0_7.1_23203.t1 | gi|296474450|tpg|DAA16565.1| | TPA: suppressor of Ty 3 homolog [Bos taurus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_7.1_23203.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7.1_23203.t1 atgagcagtaaatcggacggtgctaacccggctccagccgtgtctcaggccaacgcccaaacatccccagggaccaaaac aacctccaccacacactggtacacttcagaaatacagcaaatgatgcatggatttggtgactgtagaaaacccctattgg attcagcagtactcatcgaagatatcgtcaaacagcaaatgacgtcactgttgcaccagacttcagacattgcctccatg agaggaagcaggtttatcggattagaagatctgttattccttctgagaaaagacaaggtgaaattacgaaggttgctgag atatctacaaatcaaggacgagaaatcccaggttctgaagaacacgggcgtggacgaggtagaggatacaggggagggaa cccccgggacgtggggacaatcctcgtgggcaacagataaaagacggaggctcaaacaatgtcatgacttcttgtcaact atagacggaacaggtgaacttgttgctctgctagaagatcagggagtagatgaagtcaaacaagaaagactactgagagc agaattacaatctagaaacatggatgccaatcaatacatggaattcagtaatgccagacgtgtaagcctaggtaagagat ataggtcacaaagatttagggaatggttactacatggtgtgaatgtggacatcaagcccagtcagcaatctatcgagatt ttctcttacatggcatacgaaacaatagctcagattgtagactttgccctgatagtaaaacaggacttgcgtgccatcag cggagatgtcatgatgaaagcccttcctcctgttactactaatatacaggacatgtctgtgatcaacccatccgctacat ccagctctaaaccttcccctgggctcacatcaccgtctcaaagtccccctaccacgcccacatcagctggtctgtcatct tctacagggtcgttgggaggaagcagtggggcatcaacatcaagtaaaaacaaagccaagaaaaggaagaagagttccta tggaagtagtatagatatgattacatcacaagcgatccagccacaagaaattcacgaagccatacgaagatactcacaga tgattggaccattctcctctgtagtgagaacaaacccatatcatttacccaagatgaacctggcctgctgctga |
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Protein
| Protein ID | pfu_aug2.0_7.1_23203.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7.1_23203.t1 MSSKSDGANPAPAVSQANAQTSPGTKTTSTTHWYTSEIQQMMHGFGDCRKPLLDSAVLIEDIVKQQMTSLLHQTSDIASM RGSRFIGLEDLLFLLRKDKVKLRRLLRYLQIKDEKSQVLKNTGVDEVEDTGEGTPGTWGQSSWATDKRRRLKQCHDFLST IDGTGELVALLEDQGVDEVKQERLLRAELQSRNMDANQYMEFSNARRVSLGKRYRSQRFREWLLHGVNVDIKPSQQSIEI FSYMAYETIAQIVDFALIVKQDLRAISGDVMMKALPPVTTNIQDMSVINPSATSSSKPSPGLTSPSQSPPTTPTSAGLSS STGSLGGSSGASTSSKNKAKKRKKSSYGSSIDMITSQAIQPQEIHEAIRRYSQMIGPFSSVVRTNPYHLPKMNLACC |
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