Gene
| Gene Model ID | pfu_aug2.0_7.1_23214 |
|---|---|
| Locus | scaffold7.1 : 579657 ... 591271 : - |
| To GenomeBrowser | scaffold7.1:579657..591271 |
| Genes list of scaffold | scaffold7.1 |
| Synonym | pfu_aug1.0_13618.1_03369 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| exosome complex component csl4 | GO:0000178 GO:0003723 GO:0005634 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_7.1_23214.t1 | 1 | 1 | ECR1_N | 6 | 39 | 8.8e-14 | 50.5 | 2.6e-17 | 1.9e-13 | 49.4 |
| pfu_aug2.0_7.1_23214.t1 | 1 | 1 | EXOSC1 | 64 | 135 | 7.4e-27 | 93.1 | 1.9e-30 | 1.4e-26 | 92.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_7.1_23214.t1 | gi|676482720|ref|XP_009062793.1| | hypothetical protein LOTGIDRAFT_195007 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_7.1_23214.t1 | gi|524897541|ref|XP_005105231.1| | PREDICTED: exosome complex component CSL4-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_7.1_23214.t1 | gi|505845903|ref|XP_004616431.1| | PREDICTED: exosome complex component CSL4 [Sorex araneus] | 0.0 |
| pfu_aug2.0_7.1_23214.t1 | gi|507622086|ref|XP_004625565.1| | PREDICTED: exosome complex component CSL4 isoform X1 [Octodon degus] | 0.0 |
| pfu_aug2.0_7.1_23214.t1 | gi|291404567|ref|XP_002718659.1| | PREDICTED: exosome complex component CSL4 [Oryctolagus cuniculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_7.1_23214.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7.1_23214.t1 atgtctgcgcccataatatgtgtgccaggtcaaaggatttgtaaattagaggaatctgtgatctcgggtaaaggaacata cacacgtaatgggtacatttactcaagtttagctggatgtctgagcaagaaggaaaatgatgaaaagaagactctcgtag aagtacagctcggcgaggagaagaatcttgtaccatctgttgattctattgttacaacaaaaataaccaatgtgaatcct agattttgtaagtgtcacattctcagtgttggtaaagcaccactaaaggaacccttcagaggaacaataaggaaagaaga tgttagagccactgaaaaagacaaagtagagatgtataaatgtttccgtccaggggatcttgttgtagccagagttttat ctttaggggacgcccattcctacttactcagtacagcagagaatgaactaggtgttgtcatggcaacaagtgaagcaggt gcatcgatggagccaataagctggtgtaaaatgaaatgtccaaagaccttagcagaggagtatagaaaagtcgccaaagt acaacaaaaatatatacagttcagtgacacttga |
|
Protein
| Protein ID | pfu_aug2.0_7.1_23214.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7.1_23214.t1 MSAPIICVPGQRICKLEESVISGKGTYTRNGYIYSSLAGCLSKKENDEKKTLVEVQLGEEKNLVPSVDSIVTTKITNVNP RFCKCHILSVGKAPLKEPFRGTIRKEDVRATEKDKVEMYKCFRPGDLVVARVLSLGDAHSYLLSTAENELGVVMATSEAG ASMEPISWCKMKCPKTLAEEYRKVAKVQQKYIQFSDT |
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