Gene
| Gene Model ID | pfu_aug2.0_7.1_23216 |
|---|---|
| Locus | scaffold7.1 : 602977 ... 615501 : - |
| To GenomeBrowser | scaffold7.1:602977..615501 |
| Genes list of scaffold | scaffold7.1 |
| Synonym | pfu_aug1.0_7763.1_24277 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| t-complex protein 1 subunit eta | GO:0002199 GO:0005524 GO:0005739 GO:0005832 GO:0005874 GO:0006457 GO:0007339 GO:0042802 GO:0044297 GO:0051082 GO:0070062 GO:1901998 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_7.1_23216.t1 | 2 | 1 | Cpn60_TCP1 | 32 | 207 | 0.0 | 447.0 | 0.0 | 0.0 | 187.8 |
| pfu_aug2.0_7.1_23216.t1 | 2 | 2 | Cpn60_TCP1 | 206 | 467 | 0.0 | 447.0 | 0.0 | 0.0 | 262.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_7.1_23216.t1 | gi|82233791|sp|Q5ZJK8.1|TCPH_CHICK | T-complex protein 1 subunit eta [Gallus gallus] | 0.0 |
| pfu_aug2.0_7.1_23216.t1 | gi|729764086|ref|XP_010579093.1| | PREDICTED: T-complex protein 1 subunit eta [Haliaeetus leucocephalus] | 0.0 |
| pfu_aug2.0_7.1_23216.t1 | gi|657563534|ref|XP_008285099.1| | PREDICTED: T-complex protein 1 subunit eta [Stegastes partitus] | 0.0 |
| pfu_aug2.0_7.1_23216.t1 | gi|156405471|ref|XP_001640755.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_7.1_23216.t1 | gi|697502844|ref|XP_009680144.1| | PREDICTED: LOW QUALITY PROTEIN: T-complex protein 1 subunit eta [Struthio camelus australis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_7.1_23216.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7.1_23216.t1 atgatgcaaccacagattatattgctgaaggagggaacagacagttcccagggtgtcccccaggtggtcagtaacataaa tgcctgtcaggctatcgctgatgctgtacgtaccaccctgggacccaggggcatggacaaacttattgtagatgataaag gaaaagctgtaatatcaaatgatggtgccaccattttaaagaccctagatatagtccacccagcagctaagacactagta gatattgccaagtcacaagatgctgaggtgggagatgggactacctcggttgtattacttgcaggagagtttctgaagca agcaaaaccgtttgttgaggaaaatgtccatccacaaatcatcatcagagctttcagaagagctgtaaatatgctagttc aaaaaattcaggagatctcagttaaaatttctaaagatgataaaaatgaacagaaagaattgctacagaagtgtgctgcc actacacttagttctaagctggtagctcatcagaaagatttcttctccaagatggtggtagatgctgttggattattaga cgaccttttacctttgaacatgataggagtaaagaaagtaacaggaggtgccctagaggaataccaatcaatagtagatg cggaatggaagatactatacgacaagctagagaaaatccaccagagtggtgccaaagtagtattatctaaactccccatc ggagatgtggccacacagtactttgctgatagggacatgttttgtgctggccgagtaccagaagaagatctgagaagaac catgaaagcttgtggaggctcgatacaaacaacaacacaaagtctgactgacgatgtactgggcaagtgtcagctgttcg aagaaacacagataggaggtgataggtataactttttcaatggttgtccacaagccaaaacatgtaccatcattttgaga ggtggagcagaacaattcatagaggaaacagaacgatcattacatgatgccatcatgattgtacgacgagcaatgaaaaa cgatgcggtcgtagctggtggaggagcaatagaaatggaacttagtaaatatctgagagatttttcacggacaattgcgg gtaaagaacaactaatgattggggccatggccaaggcattggaggtcattccaagacaattatgtgataatgctggattc gatgctacaaacatactgaataaactcagacagaaacattcggaagctggattgtggtacggtgttaatataatgaatga agatatagcggacaattttgaagactgtgtatgggagcctgctatagttaaaattaatgctcttaccgccgcagtggaag ctacgtgtttaatattatctgtggacgagaccattaaaaatccaaaatctgggggagaggccccaggaggcgggggaatg ggacgtggaaggggaagacctatgtaa |
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Protein
| Protein ID | pfu_aug2.0_7.1_23216.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7.1_23216.t1 MMQPQIILLKEGTDSSQGVPQVVSNINACQAIADAVRTTLGPRGMDKLIVDDKGKAVISNDGATILKTLDIVHPAAKTLV DIAKSQDAEVGDGTTSVVLLAGEFLKQAKPFVEENVHPQIIIRAFRRAVNMLVQKIQEISVKISKDDKNEQKELLQKCAA TTLSSKLVAHQKDFFSKMVVDAVGLLDDLLPLNMIGVKKVTGGALEEYQSIVDAEWKILYDKLEKIHQSGAKVVLSKLPI GDVATQYFADRDMFCAGRVPEEDLRRTMKACGGSIQTTTQSLTDDVLGKCQLFEETQIGGDRYNFFNGCPQAKTCTIILR GGAEQFIEETERSLHDAIMIVRRAMKNDAVVAGGGAIEMELSKYLRDFSRTIAGKEQLMIGAMAKALEVIPRQLCDNAGF DATNILNKLRQKHSEAGLWYGVNIMNEDIADNFEDCVWEPAIVKINALTAAVEATCLILSVDETIKNPKSGGEAPGGGGM GRGRGRPM |
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