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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_7.1_23217
Locus scaffold7.1 : 640161 ... 670221 : -
To GenomeBrowser scaffold7.1:640161..670221
Genes list of scaffold scaffold7.1
Synonym pfu_aug1.0_1877.1_44167

Manual annotation
Annotation by Blast2GO
Annotation GO
transcription factor coe3 isoform x3 GO:0005488 GO:0006355

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_7.1_23217.t2 1 1 TIG 226 306 2.4e-12 46.6 3.8e-16 5.6e-12 45.4

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_7.1_23217.t2 gi|642914636|ref|XP_008190293.1| PREDICTED: transcription factor collier isoform X1 [Tribolium castaneum] 0.0
pfu_aug2.0_7.1_23217.t2 gi|617650405|ref|XP_007533768.1| PREDICTED: transcription factor COE3 isoform X3 [Erinaceus europaeus] 0.0

Transcript
Transcript IDpfu_aug2.0_7.1_23217.t1
Definition-
>pfu_aug2.0_7.1_23217.t1
atgtccggagcgaccgattccgctccagtgagaattaactctgtccaaacacctatgaaggaggaacctcataattctac
acaggttaaccctgtacgaaactggatgcagcccacagtcgtagaccagggtggtggaagtgtcgggtttggccgtgcac
atttcgagaagcagccaccaagcaatttaaggaaaagtaatttctttcatttcgtgttggctttatatgatagacagggg
caacctattgaagtggaaaggactgcatttatagactttgtagaaaaagatcaggaggaacacggacaaaaaacaaataa
tggaattcattacagattacaattattatttgcaaacggtcaagataaaaatccagagatgtgccgagtgctactcacac
acgaggtcatgtgtagtcgatgttgtgacaaaaagagctgcggcaatcgtaacgagaccccatccgatcccgtcattata
gacagatttttcttgaaattcttcatgaaatgtaaccaaaattgcctgaagaatgcggggaacccacgtgacatgaggcg
cttccaggttgctatttgcacaacaatatcaatagatgatgcatggtttttggcggactcctacacgtcacgggcgtttt
cccgctacccaagggatgcagggacaataactacaccgtgtataaaggcaatctgtccgagtgagggctggacgacaggg
gggacgactgtaatcatcattggggataacttttttgatggacttcaggttgtgtttggcactatgttggtatggagtga
gttgataacgtctcatgccatacgagtgcagacacctccccgtcacatcccgggggtggtggaggtaacgctctcctaca
aatccaaacaattctgtaaaggtgctcctggcagatatgtctatactgctttgacagaacccaccatcgactacggcttc
caaaggctgatgaagctcgtgccccgtcaccccggggatccagagagactccccaaggagattgttctaaaacgcgcagc
cgatctcgcagaagctatttatagtggtatgcccaggaaccataatcaacttccgttaccccctccaagatcccccgcaa
tgaataacgggtcacctatgtccagtttcaacgccccttactccggacaactagccgtcagcatccaagaaacgaatggc
caatgggaagatggttatgcccgaggtcaggcttccagtgtttcgcccagggggtacggttcaaacggctcaacgccaca
tagtaatggcagtagttatagctctacagcaatgaacggctaccacgcccctacagggggactaggaaatatgggaatga
gcagtcttgtgacgtcaccgttttctgctgtgaatccgtttgcgttaccaacgtgcaatggacaaacttacggaagctca
atatttctccagctaaatgatactctcattgtacttccggtaatgaaaatgaacaatcaaaagagtgctatatga
Transcript IDpfu_aug2.0_7.1_23217.t2
Definition-
>pfu_aug2.0_7.1_23217.t2
atgtccggagcgaccgattccgctccagtgagaattaactctgtccaaacacctatgaaggaggaacctcataattctac
acaggttaaccctgtacgaaactggatgcagcccacagtcgtagaccagggtggtggaagtgtcgggtttggccgtgcac
atttcgagaagcagccaccaagcaatttaaggaaaagtaatttctttcatttcgtgttggctttatatgatagacagggg
caacctattgaagtggaaaggactgcatttatagactttgtagaaaaagatcaggaggaacacggacaaaaaacaaataa
tggaattcattacagattacaattattatttgcaaacggtcaagataaaaatccagagatgtgccgagtgctactcacac
acgaggtcatgtgtagtcgatgttgtgacaaaaagagctgcggcaatcgtaacgagaccccatccgatcccgtcattata
gacagatttttcttgaaattcttcatgaaatgtaaccaaaattgcctgaagaatgcggggaacccacgtgacatgaggcg
cttccaggttgctatttgcacaacaatatcaatagatgatgcatggtttttggcggactcctacacgtcacgggcgtttt
cccgctacccaagggatgcagggacaataactacaccgtgtataaaggcaatctgtccgagtgagggctggacgacaggg
gggacgactgtaatcatcattggggataacttttttgatggacttcaggttgtgtttggcactatgttggtatggagtga
gttgataacgtctcatgccatacgagtgcagacacctccccgtcacatcccgggggtggtggaggtaacgctctcctaca
aatccaaacaattctgtaaaggtgctcctggcagatatgtctatactgctttgacagaacccaccatcgactacggcttc
caaaggctgatgaagctcgtgccccgtcaccccggggatccagagagactccccaaggagattgttctaaaacgcgcagc
cgatctcgcagaagctatttatagtggtatgcccaggaaccataatcaacttccgttaccccctccaagatcccccgcaa
tgaataacgggtcacctatgtccagtttcaacgccccttactccggacaactagccgtcagcatccaagaaacgaatggc
caatgggaagatggttatgcccgaggtcaggcttccagtgtttcgcccagggggtacggttcaaacggctcaacgccaca
tagtaatggcagtagttatagctctacagcaatgaacggctaccacgcccctacagggggactaggaaatatggttggtc
cctcacaatcgcccaccttacccccttctgtgcccaattccggctttcatcaacagggaggcccggcgggcatattctct
ttctctccagccaatatgatcaacgccgtcaaacagaaaagcgcctttgcccccgtggtgaagcccgggacagggtgtag
cccacctatgggtggaatgcctgctgggtgggctcatccaattttaagtgaatga

Protein
Protein IDpfu_aug2.0_7.1_23217.t1
Definition-
>pfu_aug2.0_7.1_23217.t1
MSGATDSAPVRINSVQTPMKEEPHNSTQVNPVRNWMQPTVVDQGGGSVGFGRAHFEKQPPSNLRKSNFFHFVLALYDRQG
QPIEVERTAFIDFVEKDQEEHGQKTNNGIHYRLQLLFANGQDKNPEMCRVLLTHEVMCSRCCDKKSCGNRNETPSDPVII
DRFFLKFFMKCNQNCLKNAGNPRDMRRFQVAICTTISIDDAWFLADSYTSRAFSRYPRDAGTITTPCIKAICPSEGWTTG
GTTVIIIGDNFFDGLQVVFGTMLVWSELITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRYVYTALTEPTIDYGF
QRLMKLVPRHPGDPERLPKEIVLKRAADLAEAIYSGMPRNHNQLPLPPPRSPAMNNGSPMSSFNAPYSGQLAVSIQETNG
QWEDGYARGQASSVSPRGYGSNGSTPHSNGSSYSSTAMNGYHAPTGGLGNMGMSSLVTSPFSAVNPFALPTCNGQTYGSS
IFLQLNDTLIVLPVMKMNNQKSAI
Protein IDpfu_aug2.0_7.1_23217.t2
Definition-
>pfu_aug2.0_7.1_23217.t2
MSGATDSAPVRINSVQTPMKEEPHNSTQVNPVRNWMQPTVVDQGGGSVGFGRAHFEKQPPSNLRKSNFFHFVLALYDRQG
QPIEVERTAFIDFVEKDQEEHGQKTNNGIHYRLQLLFANGQDKNPEMCRVLLTHEVMCSRCCDKKSCGNRNETPSDPVII
DRFFLKFFMKCNQNCLKNAGNPRDMRRFQVAICTTISIDDAWFLADSYTSRAFSRYPRDAGTITTPCIKAICPSEGWTTG
GTTVIIIGDNFFDGLQVVFGTMLVWSELITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRYVYTALTEPTIDYGF
QRLMKLVPRHPGDPERLPKEIVLKRAADLAEAIYSGMPRNHNQLPLPPPRSPAMNNGSPMSSFNAPYSGQLAVSIQETNG
QWEDGYARGQASSVSPRGYGSNGSTPHSNGSSYSSTAMNGYHAPTGGLGNMVGPSQSPTLPPSVPNSGFHQQGGPAGIFS
FSPANMINAVKQKSAFAPVVKPGTGCSPPMGGMPAGWAHPILSE

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