Gene
| Gene Model ID | pfu_aug2.0_7.1_23222 |
|---|---|
| Locus | scaffold7.1 : 867670 ... 869492 : - |
| To GenomeBrowser | scaffold7.1:867670..869492 |
| Genes list of scaffold | scaffold7.1 |
| Synonym | pfu_aug1.0_411.1_00292 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_7.1_23222.t1 | 2 | 1 | zf-B_box | 8 | 50 | 5.9e-09 | 35.6 | 9.9e-07 | 0.0024 | 17.7 |
| pfu_aug2.0_7.1_23222.t1 | 2 | 2 | zf-B_box | 73 | 112 | 5.9e-09 | 35.6 | 1.5e-08 | 3.7e-05 | 23.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_7.1_23222.t1 | gi|432882538|ref|XP_004074080.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM71 [Oryzias latipes] | 6.0e-14 |
| pfu_aug2.0_7.1_23222.t1 | gi|260805102|ref|XP_002597426.1| | hypothetical protein BRAFLDRAFT_80577 [Branchiostoma floridae] | 2.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_7.1_23222.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7.1_23222.t1 atggcgacaaattgtactgcaccatgttctctttgtgacggaaaaaatgaaataagtcggaaatgtctgaactgtgacga gtttatgtgtacggattgtagtaagatacacctcaaaagtaaaaggtctaaggaccataacgtaataacggtagaggaca cagaaaaacttactgccttggtgttatacgaacctcgagataacaaatcccatgacgaggaatgtacccggcatcgtggt gagaagtacatgttattctgtgtgaacagagagtgtgactgtttggtgtgtagttcgtgtataactgagtaccatcaggg tcataggttcgttcgtatagacgacatacttacagagtataaacgtctggacgctcagaggaacagagacgagatagagg acaatatccttccttatcttagagacaagaaagcacaggttgccaaggcgaaagaaaatgtcatctctgatatcgaaaac aaaaaagagaccataaagcaaaggtacgagcacattagaaaacaactagattcccattacaagaagacattgtcatacct cggggaaacagggaaagtcagcattgatatgcttgacgaactgaacaaagaggtagacaaacacataactcgcttacgtc acgtcgtagatacgactgatgatgtcattgatgacgaaaaccagttcaaagtaataaaacttgcacaacaacttgtagat gacatccatggtacccctgaaattcagatcccggggatcaacaggttgatgttaacccctgggcagtgttccatagagga tgtattcggggagttgcaggaagtgtatgaatgcgagccgattactatatcacgagcgtacacaggtttttctgaagtgt ctactctatgcccagtatcgccatacgaaacctggtttggacactataatcatagaggcatacgacttcttgaattggat gaatcagaacgactttatcctacggcaaattttgggcgggaaggagctttaaatttagctacatcaccggaaggagactt gtacatggtttcgtatggaagctacgacattactttgttgaaaacagacggaacaaccgccaaagtgtgtgacactagtc cactcgtagcactagggataggtatgacgaaaaaccgcgatgtactactttgtcttgcggaagcatatccgagtgaaatg aagtcagatggtgagagtaaagtggcacgattaacaaacttcggtgttcgaaaacaagaaatagaattcgacgaaattgg acgaaaaattttcgtgtatccattcagagtaggtgaaaatacgaatggagatattggggtcatagatcacgtgggggatt cagaaggaaagctcgtggtagtggattccgaaggcagagtaaaattccgttattcgggattaaacgatgatggaaacaat gactgtaatctgacagaccttgccttcgacaacgagggatgtattctgcttacggacgtgacgaaccagaccgtccatat gcttgccaaagatggcacgtttctcaggtttttagatatatttgtctggtatggttccaagctctcacccaccacactag ctctggacagtactgaatgtctgtgggtgggcggtgtgcataaacacagatattttgaccgaaatgacgcatatgtatta agagtgaaatacaaattataa |
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Protein
| Protein ID | pfu_aug2.0_7.1_23222.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7.1_23222.t1 MATNCTAPCSLCDGKNEISRKCLNCDEFMCTDCSKIHLKSKRSKDHNVITVEDTEKLTALVLYEPRDNKSHDEECTRHRG EKYMLFCVNRECDCLVCSSCITEYHQGHRFVRIDDILTEYKRLDAQRNRDEIEDNILPYLRDKKAQVAKAKENVISDIEN KKETIKQRYEHIRKQLDSHYKKTLSYLGETGKVSIDMLDELNKEVDKHITRLRHVVDTTDDVIDDENQFKVIKLAQQLVD DIHGTPEIQIPGINRLMLTPGQCSIEDVFGELQEVYECEPITISRAYTGFSEVSTLCPVSPYETWFGHYNHRGIRLLELD ESERLYPTANFGREGALNLATSPEGDLYMVSYGSYDITLLKTDGTTAKVCDTSPLVALGIGMTKNRDVLLCLAEAYPSEM KSDGESKVARLTNFGVRKQEIEFDEIGRKIFVYPFRVGENTNGDIGVIDHVGDSEGKLVVVDSEGRVKFRYSGLNDDGNN DCNLTDLAFDNEGCILLTDVTNQTVHMLAKDGTFLRFLDIFVWYGSKLSPTTLALDSTECLWVGGVHKHRYFDRNDAYVL RVKYKL |
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