Gene
| Gene Model ID | pfu_aug2.0_701.1_04490 |
|---|---|
| Locus | scaffold701.1 : 124701 ... 134585 : - |
| To GenomeBrowser | scaffold701.1:124701..134585 |
| Genes list of scaffold | scaffold701.1 |
| Synonym | pfu_aug1.0_59.1_43447 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna repair protein rad51 homolog 1 isoform x1 | GO:0000800 GO:0003684 GO:0003690 GO:0005524 GO:0005730 GO:0005739 GO:0006268 GO:0007126 GO:0008022 GO:0010569 GO:0016605 GO:0042802 GO:0043142 GO:0046686 GO:0048471 GO:0051106 GO:0051260 GO:0051597 GO:0070182 GO:0071479 GO:0072757 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_701.1_04490.t1 | 2 | 1 | HHH_5 | 29 | 79 | 7.6e-12 | 45.2 | 4.2e-15 | 7.7e-12 | 45.2 |
| pfu_aug2.0_701.1_04490.t1 | 1 | 1 | Rad51 | 82 | 337 | 0.0 | 474.0 | 0.0 | 0.0 | 473.7 |
| pfu_aug2.0_701.1_04490.t1 | 1 | 1 | AAA_25 | 93 | 267 | 1.4e-14 | 53.9 | 1.1e-17 | 2.0e-14 | 53.4 |
| pfu_aug2.0_701.1_04490.t1 | 1 | 1 | RecA | 93 | 303 | 1.1e-06 | 27.9 | 9.2e-10 | 1.7e-06 | 27.3 |
| pfu_aug2.0_701.1_04490.t1 | 1 | 1 | KaiC | 101 | 270 | 2.7e-06 | 26.7 | 4.6e-09 | 8.5e-06 | 25.0 |
| pfu_aug2.0_701.1_04490.t1 | 2 | 2 | HHH_5 | 104 | 118 | 7.6e-12 | 45.2 | 4.4 | 8100.0 | -3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_701.1_04490.t1 | gi|524878426|ref|XP_005095900.1| | PREDICTED: DNA repair protein RAD51 homolog 1-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_701.1_04490.t1 | gi|524878424|ref|XP_005095899.1| | PREDICTED: DNA repair protein RAD51 homolog 1-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_701.1_04490.t1 | gi|701417056|ref|XP_009999752.1| | PREDICTED: DNA repair protein RAD51 homolog 1 [Chaetura pelagica] | 0.0 |
| pfu_aug2.0_701.1_04490.t1 | gi|699698882|ref|XP_009890722.1| | PREDICTED: DNA repair protein RAD51 homolog 1 isoform X1 [Charadrius vociferus] | 0.0 |
| pfu_aug2.0_701.1_04490.t1 | gi|723572725|ref|XP_010306237.1| | PREDICTED: DNA repair protein RAD51 homolog 1 isoform X1 [Balearica regulorum gibbericeps] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_701.1_04490.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_701.1_04490.t1 atggccatgcaagcgcgtcaggaagcccagcaagtagaagtggaggatgaaaactttggtccaatgaccattaacaaact ggaggcccatggaatcagtgccactgatgttaagaagctagaagaagcaggatattatacagtagaagctattgcatatg ctccaaagaaaagtttacttgccatcaaaggtattagtgaggccaaagctgataaaatattagcagaagctgcaaagttg gtacccatgggttttactacagccacagaattccatcagaaaagatcagagatcattcaagttactactggatctaaaga acttgacaaattacttcaaggtggaatagagacaggctctattacagaactatttggtgaatttaggacaggaaaatctc agctttgtcacacattagcagtcacctgtcaactgccaatagacatgggaggtggggaaggcaaggctatgtacatagat actgaaggaacatttagaccagaacgcttactagctgtagctgaaagatatggattatcgggaagtgatgtgttagataa cgtggcctatgctagggcgtataatagtgatcatcagtcccagctgttagtacaagctgcagctatgatgtcggagtcaa ggtatgctctgttaattgtggacagtgctacagggttataccgtacagattattcagggagaggagaactctcagccaga caaatgcatctcgccaggtttttaaggatgttactaagacttgctgatgagttcggagtggctgttgtaataacaaatca ggtggtggcccaggtagatggagctgccatgttctctgctgatccaaaaaagccgatcggtggaaatatcattgcccatg cttccacaacaagactgtacctcaggaaagggagaggagagactcgtatttgtaagatctatgattcaccttgcttaccg gaggctgaggcaacattcgccattaatactgacggtataggagatgccaaggactga |
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Protein
| Protein ID | pfu_aug2.0_701.1_04490.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_701.1_04490.t1 MAMQARQEAQQVEVEDENFGPMTINKLEAHGISATDVKKLEEAGYYTVEAIAYAPKKSLLAIKGISEAKADKILAEAAKL VPMGFTTATEFHQKRSEIIQVTTGSKELDKLLQGGIETGSITELFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKAMYID TEGTFRPERLLAVAERYGLSGSDVLDNVAYARAYNSDHQSQLLVQAAAMMSESRYALLIVDSATGLYRTDYSGRGELSAR QMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFSADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLP EAEATFAINTDGIGDAKD |
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