Gene
| Gene Model ID | pfu_aug2.0_701.1_04497 |
|---|---|
| Locus | scaffold701.1 : 217890 ... 226633 : + |
| To GenomeBrowser | scaffold701.1:217890..226633 |
| Genes list of scaffold | scaffold701.1 |
| Synonym | pfu_aug1.0_13598.1_53983 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_701.1_04497.t1 | 2 | 1 | COX16 | 11 | 87 | 1.2e-13 | 50.9 | 2.5e-17 | 1.2e-13 | 50.9 |
| pfu_aug2.0_701.1_04497.t1 | 2 | 2 | COX16 | 92 | 101 | 1.2e-13 | 50.9 | 1.1 | 5300.0 | -2.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_701.1_04497.t1 | gi|459179612|ref|XP_004226519.1| | PREDICTED: cytochrome c oxidase assembly protein COX16 homolog, mitochondrial-like [Ciona intestinalis] | 6.0e-16 |
| pfu_aug2.0_701.1_04497.t1 | gi|72105896|ref|XP_786464.1| | PREDICTED: cytochrome c oxidase assembly protein COX16 homolog, mitochondrial [Strongylocentrotus purpuratus] | 2.0e-12 |
| pfu_aug2.0_701.1_04497.t1 | gi|62955165|ref|NP_001017594.1| | COX16 cytochrome c oxidase assembly homolog [Danio rerio] | 3.0e-12 |
| pfu_aug2.0_701.1_04497.t1 | gi|632951728|ref|XP_007891459.1| | PREDICTED: cytochrome c oxidase assembly protein COX16 homolog, mitochondrial [Callorhinchus milii] | 9.0e-12 |
| pfu_aug2.0_701.1_04497.t1 | gi|641774426|ref|XP_008170773.1| | PREDICTED: cytochrome c oxidase assembly protein COX16 homolog, mitochondrial [Chrysemys picta bellii] | 1.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_701.1_04497.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_701.1_04497.t1 atgaaagagaagaaagaatctccacatttcaaatggggagctccatttatggtaattttgtttgctgcctacctgggttt aacagaaggacagaaacttcactttgagaagaaagataaatcaaggaacatgattacagaagaggaaattaaagaatata agaaaaagatgaaaccaatgacacaaatatataaagaatacagaaaaagtgccgatctagattcctgggaaaatatccga ggaccaagaccttgggaagactcaaaaactatgcaagatgaacagcggaagaatttgggtatgaaaaccagtgagtccca gtaa |
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Protein
| Protein ID | pfu_aug2.0_701.1_04497.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_701.1_04497.t1 MKEKKESPHFKWGAPFMVILFAAYLGLTEGQKLHFEKKDKSRNMITEEEIKEYKKKMKPMTQIYKEYRKSADLDSWENIR GPRPWEDSKTMQDEQRKNLGMKTSESQ |
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