Gene
| Gene Model ID | pfu_aug2.0_702.1_07814 |
|---|---|
| Locus | scaffold702.1 : 226960 ... 249082 : + |
| To GenomeBrowser | scaffold702.1:226960..249082 |
| Genes list of scaffold | scaffold702.1 |
| Synonym | pfu_aug1.0_10830.1_31992 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_702.1_07814.t1 | 5 | 1 | WD40 | 23 | 53 | 7.1e-12 | 44.7 | 9.6e-06 | 0.024 | 14.5 |
| pfu_aug2.0_702.1_07814.t1 | 5 | 2 | WD40 | 82 | 97 | 7.1e-12 | 44.7 | 0.00065 | 1.6 | 8.7 |
| pfu_aug2.0_702.1_07814.t1 | 5 | 3 | WD40 | 109 | 141 | 7.1e-12 | 44.7 | 0.0034 | 8.5 | 6.4 |
| pfu_aug2.0_702.1_07814.t1 | 5 | 4 | WD40 | 155 | 182 | 7.1e-12 | 44.7 | 0.00079 | 2.0 | 8.4 |
| pfu_aug2.0_702.1_07814.t1 | 5 | 5 | WD40 | 189 | 205 | 7.1e-12 | 44.7 | 0.88 | 2200.0 | -1.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_702.1_07814.t1 | gi|676489542|ref|XP_009064973.1| | hypothetical protein LOTGIDRAFT_236321 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_702.1_07814.t1 | gi|260814085|ref|XP_002601746.1| | hypothetical protein BRAFLDRAFT_215317 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_702.1_07814.t1 | gi|51950155|gb|AAH82383.1| | MGC81767 protein [Xenopus laevis] | 0.0 |
| pfu_aug2.0_702.1_07814.t1 | gi|353523817|ref|NP_001087857.2| | neural precursor cell expressed, developmentally down-regulated 1 [Xenopus laevis] | 0.0 |
| pfu_aug2.0_702.1_07814.t1 | gi|115291926|gb|AAI21856.1| | neural precursor cell expressed, developmentally down-regulated 1 [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_702.1_07814.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_702.1_07814.t1 atgatcatgatgataaacctgatcaccataatcagtattttaggattccattacccgttacccgagaaccacaagggtcc cgtgacaactgcattgttcaacaaagatgacacacacattgcatcaggttctcaatcaggagagatcatcgtgtacaatg tcattactggtcagggctgcaagccaatggtggctccaaaagtacatgcaatacagcagatcgagtacagcaagacaaag aagtctttgttgggtgcagcctctgatgacggaagtattaatctatgggataccaacacacggcagttgatacacggctt tactggcgcccatcgtgcccccgccactgacctctgcttctctcccataaacgacctcctgcttacgtctgtgggtctgg ataagagaattattttttatgacttgaaaagtatgaaacctgtcaacatcaaagtgacagaaaggccccttacttcactt gatgttatgagtgatggcgctaccatagcgactggatctataaacggtaaaatctccgtgtacgacctaaggaaagggag tagccccatcaaagttattgatgcccacaagtcttctgtacaagtcctacagtttcaaaatgtgaaaacgagtgaaggct cctcagaaagacagccactacgaccagttatagaggaaaacatcatgcccccttcagagagacggcaactccctgtctcc ccacctagtcaagggggacaaatagagcatacggaaccaatgagtgccacaccatttagcttaaagtccaatatttcaga cgatgccttttcaccaattcacaatgccagcggtgatggtttatcatcctttcattcagagagattccggggatcgacgt caaattcgggttttgccatgcgtcaagatttatcaggaagtggtgtgttctctccccttgctgatggtgacccgactcag aggacacgattcagcggtagtaacctttcaccacttggcagtcgaccatttccaggcaatcttcaatctccgtcgtttaa caatgttttctcaccaggcacagatcagataaaaggaatatcacaaagacttgagtccacctcaatacaacaaattgaac aatccgagacctccaccaagtcaccagaactgggtgctggcacttcggaccatgtaactccagatggaagtcctcgtctt ccctttactacaggccatgtcacaacttcatcctacagcccaccaagccagaattcaacttcacacgtgccaagtcagaa ttcaacttcacacttacatacttcacttagtcctagtcaaaaacagtacactgatacaaaatcagctgtggaattggcac ctacaaacaattctccaagaaattctacagggttagcatcaggctatacatctagtgaaacgttggacactaaaaggcca tctatgaataggctagattattctccgagcggcagtgcaggggcagaaagctatcacaggatattgacttcacccgaagg tgcccaaactgtaaactcttcagtgaatagagggcaggaaagactgcagtcacatgatcttcctggggcgtcggctgcca tgcacgctggctcaaacttccagctggaatttctacgcaatttcattcgagatgagatggaggaaatgtggcataaaatt catgaggaaaactggcagttatttttagatatgttacgactcaatactcaaatgaagacaaataattctccaagaaattc tacaggattagcgtcaggctatacatctagtgaaacgttggacactaaaaggctgtctatgaataggctagattattccc caagcggcagtgcaggggcagaaagctatcacaggatattgacttcaccagaaggtgctcaaaccgtaaactcttcagtg aatagagggcaggaaagactgcagtcacatgatcttcctggggcgtcggctgccatgcacgctggttcaaacttccagct ggaatttctacgcaatttcattcgagatgagatggaggaaatgtggcataaaattcacgaggaaaactggcagttatttt tagatatgctacgactcaatactcaaatgaagaatgaaatacagcaaatgcttcaggcttactctgtgaatcctgccttg ttggaagagatcgaacgattaaaagaggaaaacagtcgcttaagaaagatgttttaa |
|
Protein
| Protein ID | pfu_aug2.0_702.1_07814.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_702.1_07814.t1 MIMMINLITIISILGFHYPLPENHKGPVTTALFNKDDTHIASGSQSGEIIVYNVITGQGCKPMVAPKVHAIQQIEYSKTK KSLLGAASDDGSINLWDTNTRQLIHGFTGAHRAPATDLCFSPINDLLLTSVGLDKRIIFYDLKSMKPVNIKVTERPLTSL DVMSDGATIATGSINGKISVYDLRKGSSPIKVIDAHKSSVQVLQFQNVKTSEGSSERQPLRPVIEENIMPPSERRQLPVS PPSQGGQIEHTEPMSATPFSLKSNISDDAFSPIHNASGDGLSSFHSERFRGSTSNSGFAMRQDLSGSGVFSPLADGDPTQ RTRFSGSNLSPLGSRPFPGNLQSPSFNNVFSPGTDQIKGISQRLESTSIQQIEQSETSTKSPELGAGTSDHVTPDGSPRL PFTTGHVTTSSYSPPSQNSTSHVPSQNSTSHLHTSLSPSQKQYTDTKSAVELAPTNNSPRNSTGLASGYTSSETLDTKRP SMNRLDYSPSGSAGAESYHRILTSPEGAQTVNSSVNRGQERLQSHDLPGASAAMHAGSNFQLEFLRNFIRDEMEEMWHKI HEENWQLFLDMLRLNTQMKTNNSPRNSTGLASGYTSSETLDTKRLSMNRLDYSPSGSAGAESYHRILTSPEGAQTVNSSV NRGQERLQSHDLPGASAAMHAGSNFQLEFLRNFIRDEMEEMWHKIHEENWQLFLDMLRLNTQMKNEIQQMLQAYSVNPAL LEEIERLKEENSRLRKMF |
|