Gene
| Gene Model ID | pfu_aug2.0_707.1_24322 |
|---|---|
| Locus | scaffold707.1 : 118546 ... 136901 : + |
| To GenomeBrowser | scaffold707.1:118546..136901 |
| Genes list of scaffold | scaffold707.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_707.1_24322.t2 | 2 | 1 | 7tm_1 | 1 | 25 | 1.1e-09 | 37.8 | 0.36 | 600.0 | -0.7 |
| pfu_aug2.0_707.1_24322.t2 | 3 | 1 | Ldl_recept_a | 35 | 69 | 6.7e-13 | 48.2 | 3.0e-08 | 4.9e-05 | 23.1 |
| pfu_aug2.0_707.1_24322.t2 | 3 | 2 | Ldl_recept_a | 260 | 295 | 6.7e-13 | 48.2 | 4.7e-11 | 7.8e-08 | 32.0 |
| pfu_aug2.0_707.1_24322.t2 | 3 | 3 | Ldl_recept_a | 300 | 320 | 6.7e-13 | 48.2 | 0.17 | 290.0 | 1.4 |
| pfu_aug2.0_707.1_24322.t2 | 3 | 1 | LRR_8 | 358 | 417 | 3.2e-20 | 71.6 | 3.3e-12 | 5.4e-09 | 35.6 |
| pfu_aug2.0_707.1_24322.t2 | 4 | 1 | LRR_4 | 359 | 396 | 2.2e-08 | 33.4 | 9.7e-05 | 0.16 | 11.6 |
| pfu_aug2.0_707.1_24322.t2 | 4 | 2 | LRR_4 | 382 | 421 | 2.2e-08 | 33.4 | 4.7e-05 | 0.078 | 12.6 |
| pfu_aug2.0_707.1_24322.t2 | 3 | 2 | LRR_8 | 428 | 483 | 3.2e-20 | 71.6 | 7.9e-14 | 1.3e-10 | 40.8 |
| pfu_aug2.0_707.1_24322.t2 | 4 | 3 | LRR_4 | 428 | 464 | 2.2e-08 | 33.4 | 4.1e-10 | 6.8e-07 | 28.7 |
| pfu_aug2.0_707.1_24322.t2 | 4 | 4 | LRR_4 | 499 | 516 | 2.2e-08 | 33.4 | 3.3 | 5500.0 | -2.9 |
| pfu_aug2.0_707.1_24322.t2 | 3 | 3 | LRR_8 | 505 | 513 | 3.2e-20 | 71.6 | 7.7 | 13000.0 | -4.0 |
| pfu_aug2.0_707.1_24322.t2 | 2 | 2 | 7tm_1 | 533 | 635 | 1.1e-09 | 37.8 | 6.5e-13 | 1.1e-09 | 37.8 |
Transcript
| Transcript ID | pfu_aug2.0_707.1_24322.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_707.1_24322.t1 atgttactgatagtttcagttttaataattgttcttttcattcccgtggacataatccattcatcaaattcgagaaagta tcaagagtacaaatcatggcattgtaaagggaatgaattcagttgcttcaataataaccaatgtatacctatggataaat tctgtgatggtatcggagattgtgaatttgatggccgatctgatgaatttagtgatgatgaagaaatcaattgtgagtat gaatgccttgaacgacatgatatctttggaacaaagtacagaggacaaaagaaaaacggagtattgacaaacggtaaacg agctaatggatgtaaagatgaatgccgatggaaccaaacggaggctgccattacctgcaacaatggaaacgaaaccgtgc tctgtcacattcctttttgtggggaagcggcttctggtgacattagatgcgaatttgaggataatgacatctgcggttat acccttgtggacgaatttcatcgggagtacctgacagaaatattatacacagaaaatgttttcgttgaatttgtgtcttt gaaatgcgaagagctacagatgaccgaagtgtgcgacgattgcatttctcattgtacgatctctacgtcagagggaaagc atataaaacttagacttcgttttcatatgtcatggaaaaacggcaaatctgccagtgctcttgtgaggatactacatata agaatggtgaacggaccatgtcatgcggtggaaccacataaaaggaaatccgaaagaacttgtacgtcggaagaatttaa atgttccaacggtcagtgtttaccaatatctgctgtgtgtaacggatggtcggattgccgggacttagtggacgatcatt tctgtgatcagtatctgagatgcaatgaggacgaattattctgttctgttaacaagagtgtccgctgtattccaaaatca tactcaaagttcataaagaacttggtcgatccatgtaacacctcatttcacgatatcactgttccaacatcttcgaggtg tccaagcgccctcaaatgcagggggcttaatcatcttgtgaatttacaaattgataataataagatacaggttcttcata aaaaatcgttccttaatctggattctttgaagatacttgacatcagcaagaactacatcaatcagctagattttgatgtg ttcatgagtcagacagtccttgagcaacttaacctacaagataacaatttgaatcatttaagtaaatctaaagaagtgct tccaaatcttatcaagttgtccttgaggaataataaaattacttacatcagaccgaagtttttcgaaagtttccataaat tgagggaattagatctgcggggcaacaatatactacctgatcaggacatgtttgacggccttggtcttctgaaatttctg tacgttgacaactttgtgttgtgttgttacagaccaactagcgtgcaggagagaaattgtctttcaccgatagatgtatt ttcttcatgcactaacttgataaacattggcctccttcaagtctgtatttggttcacggccgttctgtctgtgtttggga atctctacgtaatggttctcagggtcaggtttggagcttggatcaaggaaccacgtgacatattagtatcagccctatgt ttatccgatctattgatgggtgcttacctcgtaatgatagcatacactgatttgcgtacaagagggaattatggaatcta ccatgatgaatggacagctagtgctgcatgcaagatagcaggcgtcagtgctaccgtatctagcgaagtatcaacgcttt gtatcttagctatcactatagacagatacctattatttaggaatccattctctactgtttttaagtccaaaaagagcatc tacgagaagacagatgtatttcccacgatacatatagtacttgttcgacctttggtattgccatcctgtggtctctcctg ggcggatccccaaggaggaatgactatcgtcacagaacccaaaatacctctcggcacagaagtggatgtttggttttccg acaaaaaaggatggaaagagaaatcgcatatcgtaaatgtgtttgatgaagtaatacattgtgacgtaccaccttatgtc attcctcgcacaactgaggtcaaagttcacctaaccctgaataataagaccattgtgacgtcatttcaaactccaaatta cgtgtatgagatggctccacagaaaactctgagttttataaagaagaacttgagtattgaagaatcggaactctga |
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| Transcript ID | pfu_aug2.0_707.1_24322.t2 |
| Definition | - |
>pfu_aug2.0_707.1_24322.t2 atgttactgatagtttcagttttaataattgttcttttcattcccgtggacataatccattcatcaaattcgagaaagta tcaagagtacaaatcatggcattgtaaagggaatgaattcagttgcttcaataataaccaatgtatacctatggataaat tctgtgatggtatcggagattgtgaatttgatggccgatctgatgaatttagtgatgatgaagaaatcaattgtgagtat gaatgccttgaacgacatgatatctttggaacaaagtacagaggacaaaagaaaaacggagtattgacaaacggtaaacg agctaatggatgtaaagatgaatgccgatggaaccaaacggaggctgccattacctgcaacaatggaaacgaaaccgtgc tctgtcacattcctttttgtggggaagcggcttctggtgacattagatgcgaatttgaggataatgacatctgcggttat acccttgtggacgaatttcatcgggagtacctgacagaaatattatacacagaaaatgttttcgttgaatttgtgtcttt gaaatgcgaagagctacagatgaccgaagtgtgcgacgattgcatttctcattgtacgatctctacgtcagagggaaagc atataaaacttagacttcgttttcatatgtcatggaaaaacggcaaatctgccagtgctcttgtgaggatactacatata agaatggtgaacggaccatgtcatgcggtggaaccacataaaaggaaatccgaaagaacttgtacgtcggaagaatttaa atgttccaacggtcagtgtttaccaatatctgctgtgtgtaacggatggtcggattgccgggacttagtggacgatcatt tctgtgatcagtatctgagatgcaatgaggacgaattattctgttctgttaacaagagtgtccgctgtattccaaaatca tactcaaagttcataaagaacttggtcgatccatgtaacacctcatttcacgatatcactgttccaacatcttcgaggtg tccaagcgccctcaaatgcagggggcttaatcatcttgtgaatttacaaattgataataataagatacaggttcttcata aaaaatcgttccttaatctggattctttgaagatacttgacatcagcaagaactacatcaatcagctagattttgatgtg ttcatgagtcagacagtccttgagcaacttaacctacaagataacaatttgaatcatttaagtaaatctaaagaagtgct tccaaatcttatcaagttgtccttgaggaataataaaattacttacatcagaccgaagtttttcgaaagtttccataaat tgagggaattagatctgcggggcaacaatatactacctgatcaggacatgtttgacggccttggtcttctgaaatttctg tacgttgacaactttgtgttgtgttgttacagaccaactagcgtgcaggagagaaattgtctttcaccgatagatgtatt ttcttcatgcactaacttgataaacattggcctccttcaagtctgtatttggttcacggccgttctgtctgtgtttggga atctctacgtaatggttctcagggtcaggtttggagcttggatcaaggaaccacgtgacatattagtatcagccctatgt ttatccgatctattgatgggtgcttacctcgtaatgatagcatacactgatttgcgtacaagagggaattatggaatcta ccatgatgaatggacagctagtgctgcatgcaagatagcaggcgtcagtgctaccgtatctagcgaagtatcaacgcttt gtatcttagctatcactatagacagatacctattatttaggaatccattctctactgtttttaagtccaaaaagagcatc tacgagaagacagatgtatttcccacgatacatatagtacttgttcgacctttggtattgccatcctgtggtctctcctg ggcggatccccaaggaggaatgactatcgtcacagaacccaaaatacctctcggcacagatatcaatgtaagctcggata aatag |
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Protein
| Protein ID | pfu_aug2.0_707.1_24322.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_707.1_24322.t1 MLLIVSVLIIVLFIPVDIIHSSNSRKYQEYKSWHCKGNEFSCFNNNQCIPMDKFCDGIGDCEFDGRSDEFSDDEEINCEY ECLERHDIFGTKYRGQKKNGVLTNGKRANGCKDECRWNQTEAAITCNNGNETVLCHIPFCGEAASGDIRCEFEDNDICGY TLVDEFHREYLTEILYTENVFVEFVSLKCEELQMTEVCDDCISHCTISTSEGKHIKLRLRFHMSWKNGKSASALVRILHI RMVNGPCHAVEPHKRKSERTCTSEEFKCSNGQCLPISAVCNGWSDCRDLVDDHFCDQYLRCNEDELFCSVNKSVRCIPKS YSKFIKNLVDPCNTSFHDITVPTSSRCPSALKCRGLNHLVNLQIDNNKIQVLHKKSFLNLDSLKILDISKNYINQLDFDV FMSQTVLEQLNLQDNNLNHLSKSKEVLPNLIKLSLRNNKITYIRPKFFESFHKLRELDLRGNNILPDQDMFDGLGLLKFL YVDNFVLCCYRPTSVQERNCLSPIDVFSSCTNLINIGLLQVCIWFTAVLSVFGNLYVMVLRVRFGAWIKEPRDILVSALC LSDLLMGAYLVMIAYTDLRTRGNYGIYHDEWTASAACKIAGVSATVSSEVSTLCILAITIDRYLLFRNPFSTVFKSKKSI YEKTDVFPTIHIVLVRPLVLPSCGLSWADPQGGMTIVTEPKIPLGTEVDVWFSDKKGWKEKSHIVNVFDEVIHCDVPPYV IPRTTEVKVHLTLNNKTIVTSFQTPNYVYEMAPQKTLSFIKKNLSIEESEL |
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| Protein ID | pfu_aug2.0_707.1_24322.t2 |
| Definition | - |
>pfu_aug2.0_707.1_24322.t2 MLLIVSVLIIVLFIPVDIIHSSNSRKYQEYKSWHCKGNEFSCFNNNQCIPMDKFCDGIGDCEFDGRSDEFSDDEEINCEY ECLERHDIFGTKYRGQKKNGVLTNGKRANGCKDECRWNQTEAAITCNNGNETVLCHIPFCGEAASGDIRCEFEDNDICGY TLVDEFHREYLTEILYTENVFVEFVSLKCEELQMTEVCDDCISHCTISTSEGKHIKLRLRFHMSWKNGKSASALVRILHI RMVNGPCHAVEPHKRKSERTCTSEEFKCSNGQCLPISAVCNGWSDCRDLVDDHFCDQYLRCNEDELFCSVNKSVRCIPKS YSKFIKNLVDPCNTSFHDITVPTSSRCPSALKCRGLNHLVNLQIDNNKIQVLHKKSFLNLDSLKILDISKNYINQLDFDV FMSQTVLEQLNLQDNNLNHLSKSKEVLPNLIKLSLRNNKITYIRPKFFESFHKLRELDLRGNNILPDQDMFDGLGLLKFL YVDNFVLCCYRPTSVQERNCLSPIDVFSSCTNLINIGLLQVCIWFTAVLSVFGNLYVMVLRVRFGAWIKEPRDILVSALC LSDLLMGAYLVMIAYTDLRTRGNYGIYHDEWTASAACKIAGVSATVSSEVSTLCILAITIDRYLLFRNPFSTVFKSKKSI YEKTDVFPTIHIVLVRPLVLPSCGLSWADPQGGMTIVTEPKIPLGTDINVSSDK |
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