Gene
| Gene Model ID | pfu_aug2.0_707.1_24326 |
|---|---|
| Locus | scaffold707.1 : 160378 ... 168215 : - |
| To GenomeBrowser | scaffold707.1:160378..168215 |
| Genes list of scaffold | scaffold707.1 |
| Synonym | pfu_aug1.0_4640.1_16453 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| u6 snrna-associated sm-like protein lsm2 | GO:0000244 GO:0005654 GO:0005737 GO:0006402 GO:0017160 GO:0019901 GO:0044822 GO:0046540 GO:0071013 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_707.1_24326.t1 | 1 | 1 | LSM | 31 | 97 | 2.0e-15 | 56.1 | 3.7e-19 | 2.7e-15 | 55.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_707.1_24326.t1 | gi|676491243|ref|XP_009065532.1| | hypothetical protein LOTGIDRAFT_222366 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_707.1_24326.t1 | gi|524890675|ref|XP_005101881.1| | PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_707.1_24326.t1 | gi|675891814|ref|XP_009031409.1| | hypothetical protein HELRODRAFT_156168 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_707.1_24326.t1 | gi|634877834|ref|XP_007949640.1| | PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Orycteropus afer afer] | 0.0 |
| pfu_aug2.0_707.1_24326.t1 | gi|354492832|ref|XP_003508548.1| | PREDICTED: U6 snRNA-associated Sm-like protein LSm2 isoform X1 [Cricetulus griseus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_707.1_24326.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_707.1_24326.t1 atgcaacttgctccgactgtaaagtctttacaatttattgcatacctttacattttccctttgtgtaactcagttaagtt gttttattccttcttcaagtcacttgttggcaaagatgtagtagtggaactcaagaatgatttaagtatttgtgggactc ttcattctgtggatcagttccttaacataaaactgacagatatcactgtaacggacccagataaatatcctcacatgctg tccgtgaagaactgtttcatcagagggtcagtagtgaggtacgtccagttaccagccgacgagtgtgacacacagctctt acaggacgcaacaaggaaagaagccgctcagaatcgacaaagatga |
|
Protein
| Protein ID | pfu_aug2.0_707.1_24326.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_707.1_24326.t1 MQLAPTVKSLQFIAYLYIFPLCNSVKLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQFLNIKLTDITVTDPDKYPHML SVKNCFIRGSVVRYVQLPADECDTQLLQDATRKEAAQNRQR |
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