Gene
| Gene Model ID | pfu_aug2.0_71.1_03556 |
|---|---|
| Locus | scaffold71.1 : 341455 ... 370136 : - |
| To GenomeBrowser | scaffold71.1:341455..370136 |
| Genes list of scaffold | scaffold71.1 |
| Synonym | pfu_aug1.0_10673.1_31949 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_71.1_03556.t1 | 4 | 1 | PID | 49 | 133 | 2.1e-13 | 50.4 | 4.9e-10 | 1.8e-06 | 27.9 |
| pfu_aug2.0_71.1_03556.t1 | 4 | 2 | PID | 156 | 198 | 2.1e-13 | 50.4 | 0.54 | 2000.0 | -1.4 |
| pfu_aug2.0_71.1_03556.t1 | 3 | 1 | DUF3350 | 187 | 195 | 1.8e-12 | 47.0 | 4.0 | 15000.0 | -5.2 |
| pfu_aug2.0_71.1_03556.t1 | 4 | 3 | PID | 317 | 415 | 2.1e-13 | 50.4 | 3.8e-11 | 1.4e-07 | 31.5 |
| pfu_aug2.0_71.1_03556.t1 | 3 | 2 | DUF3350 | 667 | 689 | 1.8e-12 | 47.0 | 1.3 | 5000.0 | -2.4 |
| pfu_aug2.0_71.1_03556.t1 | 3 | 3 | DUF3350 | 714 | 757 | 1.8e-12 | 47.0 | 4.8e-16 | 1.8e-12 | 47.0 |
| pfu_aug2.0_71.1_03556.t1 | 2 | 1 | RabGAP-TBC | 817 | 1025 | 0.0 | 165.0 | 0.0 | 0.0 | 165.0 |
| pfu_aug2.0_71.1_03556.t1 | 4 | 4 | PID | 1089 | 1132 | 2.1e-13 | 50.4 | 2.2 | 8200.0 | -3.4 |
| pfu_aug2.0_71.1_03556.t1 | 2 | 2 | RabGAP-TBC | 1094 | 1114 | 0.0 | 165.0 | 1.7 | 6200.0 | -3.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_71.1_03556.t1 | gi|471361830|ref|XP_004371477.1| | PREDICTED: TBC1 domain family member 4 isoform X4 [Trichechus manatus latirostris] | 0.0 |
| pfu_aug2.0_71.1_03556.t1 | gi|528971609|ref|XP_005213904.1| | PREDICTED: TBC1 domain family member 4 isoform X3 [Bos taurus] | 0.0 |
| pfu_aug2.0_71.1_03556.t1 | gi|617642201|ref|XP_007532016.1| | PREDICTED: TBC1 domain family member 4 isoform X4 [Erinaceus europaeus] | 0.0 |
| pfu_aug2.0_71.1_03556.t1 | gi|472394891|ref|XP_004416694.1| | PREDICTED: TBC1 domain family member 4 isoform X6 [Odobenus rosmarus divergens] | 0.0 |
| pfu_aug2.0_71.1_03556.t1 | gi|594060146|ref|XP_006054185.1| | PREDICTED: TBC1 domain family member 4 isoform X3 [Bubalus bubalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_71.1_03556.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_71.1_03556.t1 atggaaacattattggagcagccatcagagggggatatttctcccagtatttcacgatttctggtgatgtaccttggcaa ggcagtactggatcgcagataccctccacagtttgtgatgccatgggtcatggcagaggtcaaacgcaggaaggaagctt tcagagaggtcatgctggaggtcaaagttcacgtccttcagggtactgtgagtgagactgatgaaacactgtttgagcac agattgaccagtatgacacgctttgccaaaactcatcaggatccacgttgctttgcatacctgtgtcgacaaaacctgta ctgtgactttgaatgtcatgttttcttggctcataaagaagaaacagtaccagaattgttcaatagtatacaggacgcaa ccaggagggacattttcaacgaggaaatgggggagtccaaaactaacgaacccgctaaggccttttatgaagtgttgtat atgggacgtgctaaactgtcaacgaagaaaataacgtgtgctcacgtagacgatttgtgtggcaaactgtcagagaaaga aaaagagagaaagaagaaattagaggaaaatgagaagcaaagaaaaagacacggtagcggcgtgagtgtgaaaagtttac cggacaatttagagagcacagtttctgtaacggaaaatgaactggaaagacagcatgaacagttcaaaggcgttcacgcg gagtcgcctctgagcagcgctgatgaactgtccagttacggctcgagcgagaacatgctggaaaattctggacatttgtc tcattgtagtggtggactgtcaaattcagggggtctatcaaactctgacaaagactcgaaagaagatctttgcgaattct ctcacaaacatgaaaatggtgatactgagcaggcgcacaaagaacttcacgtacattttagtgatacaagtccacacgag agttcacaccatgatcctaaccgtacaatgctgttcagactcggcgccagtgatatagctctgatcagcttggataaaaa gtctgttatactagagaggaagttcaaagacatctcctcggtttcacagggaaatgataattccgaggtttttggcttca tctcacgtgaaaaggggaacacctttatttgtcatctgatgaaatgtcacaactgttctgtggttgatgagattatggca gtattgagatctgcatttcagagtgcatatgaacaaaacagacagcagatctgtattatgtgtcctttacaccagctaca tagactgtgtcaggaaatcaatggattgtctccccatgatgcctatgatctgctaatgcgtcgcctacataacttgccgg agaaagacacagctgaaatatttgctgctgttaagctagagaatccccagagttatgaggagatggtagaggtacttatg ataggtctacgtaaactgtgtgagactaaacaacaggaacattcccatatatctgataccaacaaactctctatcaaacc agagtttaacattatggagaacaaaagtaaggcctcggcagcatttgatatgctgaagaataagtgtaagaagagtctgg ctagctccttcgagaatcttatgtcaattcatcacaagaaagagagattgaggcatcgtagtggaaccacagagagtgaa ggcagtttgacaaagtctatggattcctcagtaccctccacccctgatcagtcaccgatgccttcacctgctcttgtcaa ggacgtacatttcaaattcccgagtccagagtcctctcctaaactaggtcggcctcgtagctccactctaggagcgttac ctgacgccatgcttgccaagaagtttgctgatgtaggacatttgcaggagaagtcagaggacattgggaatcataatgac cttggaaaacgacgtgcaagcacaaacagtcctatgaaacaaatgtttttgttagtggacagtggtggatccaatagaac cagtcctatatctaggtcttcgacagatgatgtagaaggcacacccaaatacacaccccggagacgagggtcctggagac aggcaatgttcaaccgagttgtcacccctgccagggcacctgacacacccactgtccttgagaagtctgagagtgaacaa agcacctcacctgaaaagaaaagaagtcctgacgagatcagaacgctatggaaaaaggcaattctacaaaccctgctact catacggatggagaaagagaaacaagatataaaagctcgtcaaaatgaggctgtgcagtctcctacgctggactatgaag aaatcactccgtgtctaaaggaagtgaccaagacttgggaggagatgctgaccagcgctgaccgagacaacgcccaggtc aatccccagacactgctggactgtgtcaaacagggagttcccaagatgcaccgcgggaatatttggtggttactggtaga gcagcatagattacattaccctggtatacaggacaagacgccatcaaaggaatatggagaactgctgagggatctcacag agtaccaacataatattcttatagatttaggtcgtacattccctggtcacccgtacttctccacacagttaggtcctgga cagctagccttgtacaatctccttaaagcttacagtctattagacaaggaggtggggtactgtcaggggctcagtttcat tgctggcatacttcttatgcatatggaggagttatgtgcctttgaaactctgcgtcacatgatgtacaatcttgatctca gaaaacaatttcaacccaacatgatgccgctacagatccagctgtatcagttgactcgtttgatacatgacaatttccga gagttgcacgaccattttgaggaacacgagattgctcctaatctttacgccacgccttggttccttacgttgtttgcttc tcagtttccgctaggctttgtttctagagtttttgatttaatactcatgcagggagctgaggttttactgaaggttgctg tagcgttacttggtaaccataaagaactcatactccagtgcgactcttttgagacaattgttaatttcctcaagtcaaca ttgccagagatgggaatcattcagatggaacgagtcataaatcaggtatttgatatggacatcaccaagcagttacaggc ctatgaggttgaataccatgtgctccgagaagaaatgctctactcacccagtaaaggagacacagatacgatacaaaaac ttgaagaaatgaacaaaaatctcaaacaacaaaatgtagatctgctagaaaaacttcagcatatccacagtcatcaacga agcctcgagattacgatacataacttacaaacgaacgaagggaagctcaaatctcacataaaaaccttagaaatagaacg caaggcattgttaaatgtagttactaagttacggactctcatatcagaggatgattttaagggcttggacattttgttgc cgcccctctcgccaagtttaccatcttcccctgtacgtcattccaacactaccttaagcaataaaaaatctgatggacca aaaagtgtgcttaaaaagactttgtccaaaagcttgagctctcctctggagaaagagattcaggaaataggatcaaagaa ctttcagtttgaatga |
|
Protein
| Protein ID | pfu_aug2.0_71.1_03556.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_71.1_03556.t1 METLLEQPSEGDISPSISRFLVMYLGKAVLDRRYPPQFVMPWVMAEVKRRKEAFREVMLEVKVHVLQGTVSETDETLFEH RLTSMTRFAKTHQDPRCFAYLCRQNLYCDFECHVFLAHKEETVPELFNSIQDATRRDIFNEEMGESKTNEPAKAFYEVLY MGRAKLSTKKITCAHVDDLCGKLSEKEKERKKKLEENEKQRKRHGSGVSVKSLPDNLESTVSVTENELERQHEQFKGVHA ESPLSSADELSSYGSSENMLENSGHLSHCSGGLSNSGGLSNSDKDSKEDLCEFSHKHENGDTEQAHKELHVHFSDTSPHE SSHHDPNRTMLFRLGASDIALISLDKKSVILERKFKDISSVSQGNDNSEVFGFISREKGNTFICHLMKCHNCSVVDEIMA VLRSAFQSAYEQNRQQICIMCPLHQLHRLCQEINGLSPHDAYDLLMRRLHNLPEKDTAEIFAAVKLENPQSYEEMVEVLM IGLRKLCETKQQEHSHISDTNKLSIKPEFNIMENKSKASAAFDMLKNKCKKSLASSFENLMSIHHKKERLRHRSGTTESE GSLTKSMDSSVPSTPDQSPMPSPALVKDVHFKFPSPESSPKLGRPRSSTLGALPDAMLAKKFADVGHLQEKSEDIGNHND LGKRRASTNSPMKQMFLLVDSGGSNRTSPISRSSTDDVEGTPKYTPRRRGSWRQAMFNRVVTPARAPDTPTVLEKSESEQ STSPEKKRSPDEIRTLWKKAILQTLLLIRMEKEKQDIKARQNEAVQSPTLDYEEITPCLKEVTKTWEEMLTSADRDNAQV NPQTLLDCVKQGVPKMHRGNIWWLLVEQHRLHYPGIQDKTPSKEYGELLRDLTEYQHNILIDLGRTFPGHPYFSTQLGPG QLALYNLLKAYSLLDKEVGYCQGLSFIAGILLMHMEELCAFETLRHMMYNLDLRKQFQPNMMPLQIQLYQLTRLIHDNFR ELHDHFEEHEIAPNLYATPWFLTLFASQFPLGFVSRVFDLILMQGAEVLLKVAVALLGNHKELILQCDSFETIVNFLKST LPEMGIIQMERVINQVFDMDITKQLQAYEVEYHVLREEMLYSPSKGDTDTIQKLEEMNKNLKQQNVDLLEKLQHIHSHQR SLEITIHNLQTNEGKLKSHIKTLEIERKALLNVVTKLRTLISEDDFKGLDILLPPLSPSLPSSPVRHSNTTLSNKKSDGP KSVLKKTLSKSLSSPLEKEIQEIGSKNFQFE |
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