Gene
| Gene Model ID | pfu_aug2.0_711.1_04503 |
|---|---|
| Locus | scaffold711.1 : 50206 ... 51865 : + |
| To GenomeBrowser | scaffold711.1:50206..51865 |
| Genes list of scaffold | scaffold711.1 |
| Synonym | pfu_aug1.0_8510.1_60441 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_711.1_04503.t1 | 1 | 1 | C1q | 109 | 232 | 1.3e-22 | 80.1 | 1.8e-25 | 2.2e-22 | 79.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_711.1_04503.t1 | gi|543373356|ref|XP_005529897.1| | PREDICTED: collagen alpha-2(VIII) chain [Pseudopodoces humilis] | 6.0e-13 |
| pfu_aug2.0_711.1_04503.t1 | gi|529430232|ref|XP_005234926.1| | PREDICTED: LOW QUALITY PROTEIN: collagen alpha-2(VIII) chain [Falco peregrinus] | 1.0e-12 |
| pfu_aug2.0_711.1_04503.t1 | gi|731262463|ref|XP_010643572.1| | PREDICTED: collagen alpha-2(VIII) chain isoform X1 [Fukomys damarensis] | 2.0e-12 |
| pfu_aug2.0_711.1_04503.t1 | gi|617420114|ref|XP_007558207.1| | PREDICTED: complement C1q-like protein 2 isoform X2 [Poecilia formosa] | 6.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_711.1_04503.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_711.1_04503.t1 atgttagcgttggtgtgttttgtcgttactataggatgcgtattttgctcggatcagaatggtttcgagcagaggatcct ggagttggaacaaagacagaaattcacggaggaggtgtatcagagagaaatcaatggacttaaacatgaactacaagaga tgaaaaagtcggtcgcttctgtacaatctgctcaacctacttgtgagtctatgtgcaggacaaacatcgatgaaataagg aggagactggataaaatggaaagtaaatattataataagagcaagcggtttttatctggggatttggcgagtcagtcgcc tgtggctttctacgctcatttatcggcgtcacaccctgctagcggctatagacaaccaatcccattcgagaccgatgtaa cgaacgtcggtaatgcttacgagcctaaaaatggaattttcatcgccccagtggctggagtttatgcctttttctggaat attctgaatgacaagtcagcagatatccacacctcgcttacatcttcccaaggaaatctaggcagcacttacaccagcac gccctcgggtttgcacaacgaaggatcgggatttgcgatcgttcatctaaaccagggcacacatgtttgggtggagaagg aggaaggatttggcgacttcctacaggttttctcgtcattttctggattccttctgtatgtggatatgtaa |
|
Protein
| Protein ID | pfu_aug2.0_711.1_04503.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_711.1_04503.t1 MLALVCFVVTIGCVFCSDQNGFEQRILELEQRQKFTEEVYQREINGLKHELQEMKKSVASVQSAQPTCESMCRTNIDEIR RRLDKMESKYYNKSKRFLSGDLASQSPVAFYAHLSASHPASGYRQPIPFETDVTNVGNAYEPKNGIFIAPVAGVYAFFWN ILNDKSADIHTSLTSSQGNLGSTYTSTPSGLHNEGSGFAIVHLNQGTHVWVEKEEGFGDFLQVFSSFSGFLLYVDM |
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