Gene
| Gene Model ID | pfu_aug2.0_711.1_04504 |
|---|---|
| Locus | scaffold711.1 : 54589 ... 59675 : - |
| To GenomeBrowser | scaffold711.1:54589..59675 |
| Genes list of scaffold | scaffold711.1 |
| Synonym | pfu_aug1.0_8510.1_60442 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_711.1_04504.t1 | 1 | 1 | C1q | 112 | 235 | 2.8e-22 | 79.0 | 6.0e-26 | 4.4e-22 | 78.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_711.1_04504.t1 | gi|410918442|ref|XP_003972694.1| | 9.0e-11 | |
| pfu_aug2.0_711.1_04504.t1 | gi|736304602|ref|XP_010794279.1| | PREDICTED: collagen alpha-1(VIII) chain-like [Notothenia coriiceps] | 2.0e-10 |
| pfu_aug2.0_711.1_04504.t1 | gi|742113900|ref|XP_010873135.1| | PREDICTED: complement C1q-like protein 3 [Esox lucius] | 2.0e-10 |
| pfu_aug2.0_711.1_04504.t1 | gi|410929863|ref|XP_003978318.1| | 1.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_711.1_04504.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_711.1_04504.t1 atgaaaatgctaatctgtcaaggacctacattatgtttgttaagagaattgtcagatttgattatcttcattaagataca ggagttggagcaaaatcagataaccatgatggaagcacagcatgagtatcagagagaaatcaatggtctgagacatgaac tggaacagatgaaaatgtccgtcgtttctgaaaaaccagcgtatactctttgtgattatagctgtaagatggacatggca gaaataagggggagactggatggaatcgaaagtagatatactaataaaagtaagcgatttctatccgatgacgtcgtagg ccagtcatccgtggctttctacgctcatctgtcggcgtcgcatccacataccggcttcagacaaccaatcgtattcgaga ccgatgttacgaacgtcggcaatgcgtacgagcctaagaatggaattttcatcgccccagtagcaggagtttatgccttt ttctggaatgttctgaatgaccaatcagcagacattcacacctccctagcctcatcccagggaagtctagggaacacata tacaagtagatccacgggtgcaaccagcgaggggtcgggattcgccatcgttcatctcaatcaaggcacacatgtatggg tggaaaaagaggagggatttggcgacttcttacaagttttctcttcattttctggatttcttttatataaagatatgtaa |
|
Protein
| Protein ID | pfu_aug2.0_711.1_04504.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_711.1_04504.t1 MKMLICQGPTLCLLRELSDLIIFIKIQELEQNQITMMEAQHEYQREINGLRHELEQMKMSVVSEKPAYTLCDYSCKMDMA EIRGRLDGIESRYTNKSKRFLSDDVVGQSSVAFYAHLSASHPHTGFRQPIVFETDVTNVGNAYEPKNGIFIAPVAGVYAF FWNVLNDQSADIHTSLASSQGSLGNTYTSRSTGATSEGSGFAIVHLNQGTHVWVEKEEGFGDFLQVFSSFSGFLLYKDM |
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