Gene
| Gene Model ID | pfu_aug2.0_711.1_04508 |
|---|---|
| Locus | scaffold711.1 : 104137 ... 108505 : - |
| To GenomeBrowser | scaffold711.1:104137..108505 |
| Genes list of scaffold | scaffold711.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_711.1_04508.t1 | 7 | 1 | Laminin_EGF | 128 | 173 | 6.4e-07 | 29.2 | 0.0026 | 13.0 | 5.8 |
| pfu_aug2.0_711.1_04508.t1 | 7 | 2 | Laminin_EGF | 179 | 214 | 6.4e-07 | 29.2 | 0.013 | 65.0 | 3.5 |
| pfu_aug2.0_711.1_04508.t1 | 7 | 3 | Laminin_EGF | 224 | 259 | 6.4e-07 | 29.2 | 0.46 | 2300.0 | -1.4 |
| pfu_aug2.0_711.1_04508.t1 | 7 | 4 | Laminin_EGF | 270 | 307 | 6.4e-07 | 29.2 | 0.027 | 130.0 | 2.5 |
| pfu_aug2.0_711.1_04508.t1 | 7 | 5 | Laminin_EGF | 316 | 353 | 6.4e-07 | 29.2 | 0.007 | 34.0 | 4.4 |
| pfu_aug2.0_711.1_04508.t1 | 7 | 6 | Laminin_EGF | 361 | 402 | 6.4e-07 | 29.2 | 0.0003 | 1.5 | 8.8 |
| pfu_aug2.0_711.1_04508.t1 | 7 | 7 | Laminin_EGF | 408 | 433 | 6.4e-07 | 29.2 | 0.0036 | 18.0 | 5.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_711.1_04508.t1 | gi|676479281|ref|XP_009061700.1| | hypothetical protein LOTGIDRAFT_166380 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_711.1_04508.t1 | gi|260786602|ref|XP_002588346.1| | hypothetical protein BRAFLDRAFT_224574 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_711.1_04508.t1 | gi|658855587|ref|XP_008410437.1| | PREDICTED: multiple epidermal growth factor-like domains protein 11 isoform X4 [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_711.1_04508.t1 | gi|658855589|ref|XP_008410438.1| | PREDICTED: multiple epidermal growth factor-like domains protein 11 isoform X5 [Poecilia reticulata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_711.1_04508.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_711.1_04508.t1 atgcagagaatcggtaagaacacatcgtcttcaacgctagctgttgacggtgacgccaatacgtgttctttgacgcctca tggcgtcaccggatggtggagggcagatcttggtcagaagtacggacctttgagagtgtcggtggtttcaaatagttcta caggcggatggaaagttttgattggagagacagagaggtttgaagagatggtattgtgtgatattcttggaaatgacacg agtgacaccacagttgattgtggcaaacacggaccagctagattcgttgcgatactgaacccgcatgggtacctcgtcct ttgtcaggtgtctgtatatgtttgtgctcctttccagtggggacaatcttgtgaaaatcagtgcgcatgctcaaatgaag acgagcgttgtgatttagaggacggattctgcgcgagcggatgtagaccgggatggtttggtgaacagtgttcagaaagg tgtaacatgacgtatggtgtcaactgcagtaagccttgcgggcactgcctggacgatggaccatgtaacatagagtctgg ggtgtgtaaggaggggtgtgacgctgggtggacgggcagaaactgtgacatagtgtgtagtaagggatattttggacccc agtgtcaggatgtgtgcggttactgtcacgagggcgctgcttgtcgacctacagacggacactgcctacgtggatgttca gcaggatggatgggcgctatgtgcaagacaggttgtccattcggtaaatatggtgtaaattgttctgtgatatgcggtca ttgtaaagaaatatcacgttgtaatcgagtgagcggaatgtgtgagacaggttgcaggcctggttggagaggatggaatt gtaaggaagtgtgtccatctgggacgtatggcgcagactgtagtcagttttgtgagacgtgtaagaggggggagtgtaat cctgagacaggtcattgtatgacggaatgtgttgctgggtggcaaggctcgacgtgcgatacagaatgtctacctggtca tttcggtgtgaactgtaaaaaggtttgtggtaaatgtgctgatcaaatgacatgtgacccgtcaacaggtgcgtgtttca gtggctgtcatcctggttatcagggaaatacatgcaaggaagagtgtcttcatggttactatggtacaaattgttctaca agttgtggattctgtcagctgggtgaaccatgtgataaagttactggtgtctgtaacaacggatgtgtcattggttacca tggaaacaggtgtgaagaagttgacacattcacggacaacacacgtccgttctatcgggtggtgatcggtctgatggctg ctgtggtgggcgtcgtcatgttacttgtcataggctgcctcatcgtcaactggcgacgagaagacttgtcatcatatgac gcaataaaggaatccaccaatcagagacaagatcttattaatgtcgaatcgaacactctcgattcgcaagcaaacaatga ctccggtcacatgactgatgaaattcctggaaatgaatcaagagaagccagcagttctttaaataaccttgaacttcatg atttttaa |
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Protein
| Protein ID | pfu_aug2.0_711.1_04508.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_711.1_04508.t1 MQRIGKNTSSSTLAVDGDANTCSLTPHGVTGWWRADLGQKYGPLRVSVVSNSSTGGWKVLIGETERFEEMVLCDILGNDT SDTTVDCGKHGPARFVAILNPHGYLVLCQVSVYVCAPFQWGQSCENQCACSNEDERCDLEDGFCASGCRPGWFGEQCSER CNMTYGVNCSKPCGHCLDDGPCNIESGVCKEGCDAGWTGRNCDIVCSKGYFGPQCQDVCGYCHEGAACRPTDGHCLRGCS AGWMGAMCKTGCPFGKYGVNCSVICGHCKEISRCNRVSGMCETGCRPGWRGWNCKEVCPSGTYGADCSQFCETCKRGECN PETGHCMTECVAGWQGSTCDTECLPGHFGVNCKKVCGKCADQMTCDPSTGACFSGCHPGYQGNTCKEECLHGYYGTNCST SCGFCQLGEPCDKVTGVCNNGCVIGYHGNRCEEVDTFTDNTRPFYRVVIGLMAAVVGVVMLLVIGCLIVNWRREDLSSYD AIKESTNQRQDLINVESNTLDSQANNDSGHMTDEIPGNESREASSSLNNLELHDF |
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