Gene
| Gene Model ID | pfu_aug2.0_711.1_04513 |
|---|---|
| Locus | scaffold711.1 : 229178 ... 249886 : - |
| To GenomeBrowser | scaffold711.1:229178..249886 |
| Genes list of scaffold | scaffold711.1 |
| Synonym | pfu_aug1.0_85501.1_63960 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| serine--trna mitochondrial-like | GO:0016874 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_711.1_04513.t1 | 1 | 1 | tRNA-synt_2b | 150 | 324 | 3.9e-28 | 98.1 | 2.5e-31 | 7.5e-28 | 97.2 |
| pfu_aug2.0_711.1_04513.t1 | 1 | 1 | zf-HIT | 415 | 438 | 5.1e-08 | 32.4 | 6.8e-11 | 2.0e-07 | 30.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_711.1_04513.t1 | gi|676465435|ref|XP_009057243.1| | hypothetical protein LOTGIDRAFT_217090 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_711.1_04513.t1 | gi|524880086|ref|XP_005096711.1| | PREDICTED: serine--tRNA ligase, mitochondrial-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_711.1_04513.t1 | gi|665785421|ref|XP_008547119.1| | PREDICTED: serine--tRNA ligase, mitochondrial [Microplitis demolitor] | 0.0 |
| pfu_aug2.0_711.1_04513.t1 | gi|642937257|ref|XP_008198759.1| | PREDICTED: serine--tRNA ligase, mitochondrial [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_711.1_04513.t1 | gi|260830029|ref|XP_002609964.1| | hypothetical protein BRAFLDRAFT_85921 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_711.1_04513.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_711.1_04513.t1 cgatatactgtgtcttacaaaagatgggaagatcaggggaagttggaaattccacccccggagtttgattgggactacct ttgtgatgagagtaaaatggaggaaataaaagataacataatgcatagaaaaagggtcggtgatattgataaagtcaagg aaatatggaagttgtggaaaaatgagaacgatgatgaacggaagtcaaaattattaatagttctcaatactgctgcagca gctattccgaataagagtaaccctaattcaccaatcagtgaagaggaccaggctgtaaccatggagacagttggaagaga gagagaatttgactttaaacccagaagtgttattgatatatgtgaaaaattaggattactacaaacacaaaatttatcgc atacctgtagtcatagggcatattatttccttggagacctcgctagacttgaacatgctttaatacagttcacattggat cgagtaagaacgaatggatttttgcttatatcggtgccagatattataaatcctggaatcatagaagcctgtggatttcc aacatcaggtaaaaagacgcaagtgtatagtctggatttaggtaaccgtggcaacgatcgtctgtgcctggccggaacct ctgaaatgcctattgccgggttttttatgaatcaaatcctgcaggggcaacatttaccgcagaaagtatgtgccgtcagc agatgctatagagccgaaacctctgatgctgtacaagagcggggaatttatagagtgcacgagtttacgaaggtcgaaat gtttgccgttacaaggccagctcagagtgatgaaatgttgcaaaacatcatcggtatagagagggatttattctcagagc tggggttatacttcaaagttctagacatgcctactcaagaattaggggcacctgcctatcaaaaatacgacattgagact tggatgcctgcattaaagttttggggagagatttccagtgcgtcaaattgtacagattatcaaagccgacgtctgaatat caaatatatgacagacaagggagacaaccttagccatgttcataccattaacggcacagcgtgtgctattcccaggctta taatggcaatcgttgaaaattaccaacagaatgacgggagtgttgaaatacctaaagctttacagccatatatgaacgga aaaaggaaacttgaaggatgtgacctggaaaagagacggaggtgtctcaaagtgaatgcacggtacacatgccctcgctg taatattccgtactgctcattggcatgttacaaatcagaaggtcacatgacttgttccgagtcattctacaaagattgct tcatggagggacttgagaatcaggatgtcagtcaagatgagaagaaaaagatgttagagatgttagagagagtggaacaa gaagatcaagatttcctggattctgatgacgatgaagaagatttacatgaaagacttgcaggactggatttagacaatga tgcagaggaaatttggaatagattgacagataaagaaaaagaggactttcagaaaatgacagcagatggtcgccttggaa accttgttgaagtttggacaccctggtggcaagttaaggacaataaaatccaagaagttggtaaggattcctcaaagtca tcaaacctacctaacattgtgaaggatataccagatatagccactttaatcaagaatactaagccatcggctgacgtgaa gaacaacgtcataaacattctgtacgcctacgcctttgtctgccggcttcataacggtgatcacatgatgtcttgtgtgg aatcagcaaaggatttgttagcggtcagtgaggtgttagaccagaatgtagtatgtaccagtgctccacaggctgtacag tactgtatgagacaaatacaacaggatccctcactccgagttccccaggatttccaggcttcagtcatacacgatgtcat agctttactcaaagggccgtcaaattctgagccgttaaaatttgtactatgtgctctgtcacaggtgcatgacattgtat gtaaatgccagagaacggagagaaaggattcaaaatcacataacggtgaagatcattcagtattggataggaagaagtta tctggactgaagaagaagctgaagtttttattaggatggacagagagatttgggatggctttacactccctgattcccga gttacaactagaatactgtgaagatcattcagtattggataggaagaagttgtctggactgaaaaagaagctgaagtttt tattgggatggacagagagatttggcatggctttacactccctgattcctgagttacaactagaatactgtgctgtacaa agtgatttaagtgaacaaggacaaactcaggatgctgtagagaagaaccttctcagtttacggagaaaatcaagtggaaa accgctcatacaggaactggcttaa |
|
Protein
| Protein ID | pfu_aug2.0_711.1_04513.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_711.1_04513.t1 RYTVSYKRWEDQGKLEIPPPEFDWDYLCDESKMEEIKDNIMHRKRVGDIDKVKEIWKLWKNENDDERKSKLLIVLNTAAA AIPNKSNPNSPISEEDQAVTMETVGREREFDFKPRSVIDICEKLGLLQTQNLSHTCSHRAYYFLGDLARLEHALIQFTLD RVRTNGFLLISVPDIINPGIIEACGFPTSGKKTQVYSLDLGNRGNDRLCLAGTSEMPIAGFFMNQILQGQHLPQKVCAVS RCYRAETSDAVQERGIYRVHEFTKVEMFAVTRPAQSDEMLQNIIGIERDLFSELGLYFKVLDMPTQELGAPAYQKYDIET WMPALKFWGEISSASNCTDYQSRRLNIKYMTDKGDNLSHVHTINGTACAIPRLIMAIVENYQQNDGSVEIPKALQPYMNG KRKLEGCDLEKRRRCLKVNARYTCPRCNIPYCSLACYKSEGHMTCSESFYKDCFMEGLENQDVSQDEKKKMLEMLERVEQ EDQDFLDSDDDEEDLHERLAGLDLDNDAEEIWNRLTDKEKEDFQKMTADGRLGNLVEVWTPWWQVKDNKIQEVGKDSSKS SNLPNIVKDIPDIATLIKNTKPSADVKNNVINILYAYAFVCRLHNGDHMMSCVESAKDLLAVSEVLDQNVVCTSAPQAVQ YCMRQIQQDPSLRVPQDFQASVIHDVIALLKGPSNSEPLKFVLCALSQVHDIVCKCQRTERKDSKSHNGEDHSVLDRKKL SGLKKKLKFLLGWTERFGMALHSLIPELQLEYCEDHSVLDRKKLSGLKKKLKFLLGWTERFGMALHSLIPELQLEYCAVQ SDLSEQGQTQDAVEKNLLSLRRKSSGKPLIQELA |
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