Gene
| Gene Model ID | pfu_aug2.0_715.1_17756 |
|---|---|
| Locus | scaffold715.1 : 56056 ... 80581 : + |
| To GenomeBrowser | scaffold715.1:56056..80581 |
| Genes list of scaffold | scaffold715.1 |
| Synonym | pfu_aug1.0_5436.1_01997 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_715.1_17756.t1 | 3 | 1 | Suf | 50 | 109 | 1.4013e-45 | 156.2 | 0.0015 | 4.5 | 6.9 |
| pfu_aug2.0_715.1_17756.t1 | 3 | 2 | Suf | 200 | 255 | 1.4013e-45 | 156.2 | 1.1e-23 | 3.4e-20 | 72.9 |
| pfu_aug2.0_715.1_17756.t1 | 3 | 3 | Suf | 265 | 428 | 1.4013e-45 | 156.2 | 4.4e-25 | 1.3e-21 | 77.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_715.1_17756.t1 | gi|524901209|ref|XP_005107016.1| | PREDICTED: cleavage stimulation factor subunit 3-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_715.1_17756.t1 | gi|676487881|ref|XP_009064439.1| | hypothetical protein LOTGIDRAFT_236052 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_715.1_17756.t1 | gi|637245938|ref|XP_008104903.1| | PREDICTED: cleavage stimulation factor subunit 3 isoform X3 [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_715.1_17756.t1 | gi|527264887|ref|XP_005150665.1| | PREDICTED: cleavage stimulation factor subunit 3-like [Melopsittacus undulatus] | 0.0 |
| pfu_aug2.0_715.1_17756.t1 | gi|637245934|ref|XP_008104894.1| | PREDICTED: cleavage stimulation factor subunit 3 isoform X2 [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_715.1_17756.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_715.1_17756.t1 atgtcgcaccaaggagctatgctcccaccggagcaaatgggttatgttcccgacaagatgaagaaggcagacaaaagaat agcagcccatccccacgacacagaggcgtggagtgttctcatcagggatgctcaaatgaagccgatagagtttgccagac aggtttatgagaggttggtggcacaattcccgaactgcggaaaatattggaggatttacattgaacaggagcttaaggca aagaactttgaacgagttgaaaaactgtttcaaagatgcttggtaaaagtgctaaacatagatttatggaagctgtatct atcatacatcaaggacacaaagcaaaccctaccaacctacagagagaaaatggcccaggcttatgattttgccttagata agatgggaatggacatcatgtcataccagctttggacggattacatagccttcctgaaatctgtagctataacgacgttg atgaaaactaatatgttggtgtattttgcgtatgcagattttgaggagggaagaatgagatatgagaaagttcatggtat ctataaaaagttattaagtgtccaagacatcgatcctacactgggttatatacagtacatgaagtttgctcgtcgagccg agggtattaaagctgcaaggcagatatttaagatggccagagaagacgctcggacaaaatatcaagtttttgtggccgca gctttaatggaatattactgtagtaaagtaagtaaatttagtgtagaaatacattggggtcttatttcaactctagaaat ttggagtcgttttcttgcatttgaatctgaagtaggagatttatcaagtattcagaaagttgaaaagaggagagctcaag ccgttcaagaatttgaagggaaggacacagcgttattaatagacagatacaagtacattgatctctacccatgttctcag agtgagttacgtgccctgggttattatgacttagtcaagcagcaggttgtacaactccccgtaacatcagcaactaaagt agtactggaggaggagagtaacaaagagaaaccgcagtatcctaaaccagatgtagaacagatgttaccatttaaaccaa aagctgtcgtcaaaactggagcccatcctgtaccaggtggggaattccctccaccacccgcagcatcctccctcctcaca cttctccctcctcctgactgtttccatggacctttcgttattttggacaagcttgtagatcagataaacaatttagtatt acctgaagttatacctacggcagagaatggagtagatggcatgttaaaacctgatcctggcactcagctgtcgatagacc tcgctctcggacgtaaaagaaaaataacagagggagaggccagtgatgatgaagaatctgaaacgacagcccctccagct catgatatttatagaagtagacagcaaaaacgggcaaaatga |
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Protein
| Protein ID | pfu_aug2.0_715.1_17756.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_715.1_17756.t1 MSHQGAMLPPEQMGYVPDKMKKADKRIAAHPHDTEAWSVLIRDAQMKPIEFARQVYERLVAQFPNCGKYWRIYIEQELKA KNFERVEKLFQRCLVKVLNIDLWKLYLSYIKDTKQTLPTYREKMAQAYDFALDKMGMDIMSYQLWTDYIAFLKSVAITTL MKTNMLVYFAYADFEEGRMRYEKVHGIYKKLLSVQDIDPTLGYIQYMKFARRAEGIKAARQIFKMAREDARTKYQVFVAA ALMEYYCSKVSKFSVEIHWGLISTLEIWSRFLAFESEVGDLSSIQKVEKRRAQAVQEFEGKDTALLIDRYKYIDLYPCSQ SELRALGYYDLVKQQVVQLPVTSATKVVLEEESNKEKPQYPKPDVEQMLPFKPKAVVKTGAHPVPGGEFPPPPAASSLLT LLPPPDCFHGPFVILDKLVDQINNLVLPEVIPTAENGVDGMLKPDPGTQLSIDLALGRKRKITEGEASDDEESETTAPPA HDIYRSRQQKRAK |
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