Gene
| Gene Model ID | pfu_aug2.0_715.1_17757 |
|---|---|
| Locus | scaffold715.1 : 81016 ... 92690 : + |
| To GenomeBrowser | scaffold715.1:81016..92690 |
| Genes list of scaffold | scaffold715.1 |
| Synonym | pfu_aug1.0_1598.1_15537 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cryptochrome 1 (photolyase-like) | GO:0000122 GO:0000166 GO:0000989 GO:0001046 GO:0003690 GO:0003904 GO:0003914 GO:0005730 GO:0005739 GO:0006094 GO:0006281 GO:0006975 GO:0008134 GO:0009881 GO:0018298 GO:0019901 GO:0019902 GO:0019915 GO:0031397 GO:0032868 GO:0032922 GO:0033762 GO:0035257 GO:0042593 GO:0042754 GO:0042826 GO:0043130 GO:0043153 GO:0045744 GO:2000001 GO:2000323 GO:2000850 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_715.1_17757.t1 | 1 | 1 | DNA_photolyase | 11 | 123 | 8.0e-35 | 120.0 | 3.6e-38 | 1.8e-34 | 118.9 |
| pfu_aug2.0_715.1_17757.t1 | 1 | 1 | FAD_binding_7 | 195 | 471 | 0.0 | 332.2 | 0.0 | 0.0 | 331.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_715.1_17757.t1 | gi|558850319|gb|AHA91700.1| | cryptochrome 1a [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_715.1_17757.t1 | gi|573890775|ref|XP_006633148.1| | PREDICTED: cryptochrome-1-like isoform X2 [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_715.1_17757.t1 | gi|573890773|ref|XP_006633147.1| | PREDICTED: cryptochrome-1-like isoform X1 [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_715.1_17757.t1 | gi|573890777|ref|XP_006633149.1| | PREDICTED: cryptochrome-1-like isoform X3 [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_715.1_17757.t1 | gi|149067374|gb|EDM17107.1| | cryptochrome 1 (photolyase-like) [Rattus norvegicus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_715.1_17757.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_715.1_17757.t1 atgttaggtttagtctattttaatcaaattttacattggtttcggaagggactacgattacatgataatccttcgttgaa agaggccctcaaaggggcgtccacttacagatgtgtttacattctagatccttggtttgcaggatcatcgcaagtcggaa tcaacaagtggcgatttttgttacaatgtttagaggacttggatgtgtcccttagaaagttgaattcccgtctgtttgtc attcgtggccagcccacagatgtattcccacgactatttaaggaatggaacatcaccacgctctcgttcgaggaggatcc agaaccgtttgggaaggagcgggacaatgctattcgtataatcatttcactgaacaatggtgtgccgcctttaacgtaca aaagattccaatcaatcatagcaaaaatggagtcgcctaaacagccagaagagacaatcacatgtgattacctgggcaag aagaagactccgacatcagaggaccacgatgaacgatttggggtacccactctggaggaactaggttttgatacagatgg tttaggaccgaccattttccatggaggtgaaacagaagcactagcaaggctagaaagacatctggaaagaaaggcatggg tagctagttttgaaaaaccaaagatgacatcccaatccctgtttcccagtcagacagccattagtccgtacctacgattt ggttgtttatcacccagactcttctactggaaactgagggaactatatagaaaagtgaagaaaagatcagatccaccgtt gtctctacatggtcagttgttatggagggagtttttctacacagcagctacgaataatcctaattttgacagaatggttg ataatccgttgtgtgtacagataccgtgggataaaaatccagaggcactggctaaatgggcggagggtaagactggattt ccgtggatagatgctataatgacacagttaagacacgatggatggattcatcacttagccagacactctgtggcgtgttt tctcacacgtggtgatctgtgggtctcatgggaagaggggatgaaggtttttgaggagttattattagatgccgattgga gcgtgaatgccgggatgtggatgtggttgtcttgtagctcatttttccagcagttctttcattgttattgtcctgttgga tttggaaaacgggctgatcccacgggagatttcatcagagcctacctaccagttttgaagggatttccctctaagtatat atacgacccgtggaatgccccagagagtgtgcagaaagctgctaaatgtataattggtaaagattatcccataccaatgg taaatcatggagaagtcagcaaactgaatatcgagcgcatgaaacaagtgtatcaacacctcgctatacgggccactgcc gcatcgttaccgaagcagatacatgaggatgtaccgtatggtaaacttggtaaaaatctatcctccggcaatcacccttc gcgtgcaataatgatgaatgacagtaaaaatcgacatgctgagacgtcagacgaagataacggaaaacagatatacagag gtcaagctttctctcaggcttcgtag |
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Protein
| Protein ID | pfu_aug2.0_715.1_17757.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_715.1_17757.t1 MLGLVYFNQILHWFRKGLRLHDNPSLKEALKGASTYRCVYILDPWFAGSSQVGINKWRFLLQCLEDLDVSLRKLNSRLFV IRGQPTDVFPRLFKEWNITTLSFEEDPEPFGKERDNAIRIIISLNNGVPPLTYKRFQSIIAKMESPKQPEETITCDYLGK KKTPTSEDHDERFGVPTLEELGFDTDGLGPTIFHGGETEALARLERHLERKAWVASFEKPKMTSQSLFPSQTAISPYLRF GCLSPRLFYWKLRELYRKVKKRSDPPLSLHGQLLWREFFYTAATNNPNFDRMVDNPLCVQIPWDKNPEALAKWAEGKTGF PWIDAIMTQLRHDGWIHHLARHSVACFLTRGDLWVSWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVG FGKRADPTGDFIRAYLPVLKGFPSKYIYDPWNAPESVQKAAKCIIGKDYPIPMVNHGEVSKLNIERMKQVYQHLAIRATA ASLPKQIHEDVPYGKLGKNLSSGNHPSRAIMMNDSKNRHAETSDEDNGKQIYRGQAFSQAS |
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