Gene
| Gene Model ID | pfu_aug2.0_715.1_17762 |
|---|---|
| Locus | scaffold715.1 : 156683 ... 165225 : - |
| To GenomeBrowser | scaffold715.1:156683..165225 |
| Genes list of scaffold | scaffold715.1 |
| Synonym | pfu_aug1.0_14609.1_54079 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| golgi-associated pdz and coiled-coil motif-containing protein isoform x2 | GO:0005109 GO:0006914 GO:0007289 GO:0008022 GO:0015031 GO:0030054 GO:0030140 GO:0030695 GO:0042803 GO:0042995 GO:0043234 GO:0044325 GO:0045211 GO:0050790 GO:0051260 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_715.1_17762.t1 | 1 | 1 | PDZ | 257 | 336 | 9.0e-16 | 57.8 | 1.9e-18 | 2.0e-15 | 56.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_715.1_17762.t1 | gi|676429300|ref|XP_009045555.1| | hypothetical protein LOTGIDRAFT_212273 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_715.1_17762.t1 | gi|524896461|ref|XP_005104705.1| | PREDICTED: golgi-associated PDZ and coiled-coil motif-containing protein-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_715.1_17762.t1 | gi|556998073|ref|XP_006002336.1| | PREDICTED: golgi-associated PDZ and coiled-coil motif-containing protein isoform X2 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_715.1_17762.t1 | gi|148673130|gb|EDL05077.1| | golgi associated PDZ and coiled-coil motif containing, isoform CRA_b, partial [Mus musculus] | 0.0 |
| pfu_aug2.0_715.1_17762.t1 | gi|31543485|ref|NP_444417.2| | Golgi-associated PDZ and coiled-coil motif-containing protein isoform b [Mus musculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_715.1_17762.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_715.1_17762.t1 atggcagccactttgtcatttcgttggttggacatcctggaaaaggaattcgataaagcttttgttgatcttgaccttct tctaggcgagatagatccagatcaatgcgaactcacgtttgatggtcgtcagaaaatgactgcgcttagcgcagcttttg cacaactctgtcacaaagctcaaactgttttccagtctaacgctaagcttgaggctcaaatggtggatatgagatctgac gtagttgaacttcgagctgccaaggaacatgtggaacaagaacttcataatgtacttctacaacttcattccactcaact tcaacttcaggctgaaaagggggtggaagtagactccacagctatcaagaagaaagtggaagaggagatgaagagtagga cagctgaagtctctcagttagaacgtatgcaggctgaaatgaaagagttacggagagaaaacgaagatttacgacaatat gtattagctttacaaggagaagtatatggtgcccgccttgcagcaaaatatttagataaagaactggctggaaggattca acaaatacagctgcttggacgagacatgagaggggcagagcatgataagttatggaatcagttagaagcagaaatccacc tacatagacataagactgtgattcgggcttgtagaggaagaactacatggaaaaagaaattacctgtgccggctggtcat gattttcattccctcagaagacagcatggtttaggagatatacgtaaagtgacgctgattaaaggagaagatgacggctt aggtttatcaattacaggtggaaaagagcatggagtacctatcttgatttctgaaatccacgaaggtcaaccggctgata aatgtgaggcattatatgtgggtgatgcaatattgtctgtgaatggtatagatctacgtaactcaaaacatgccgaggct gtacagatcttatcacaacagactggtaatatagagctggaggtgatgtttgtgtcacctgatgaagacagtgatgaaga gaaccacggatatgaagatgagcatggctttagatacagaatatatgatgaagaggtgatgagcaatagcagtgacccgg acagaagagaggctataggtcaaaggtcaactgctgaccaaccacaagtcaatggcattcctgcttcaccagaatcaaaa tcgcaaactcctcagagatcaagtgaagagaggagtctaccaaatagtcctaacagatccagtagtaacgataaaggcgt gggatcagtacagtcacaacctatacaaaacggacaagaatctgccgcatcgccaacttttaacagtgattatacctaa |
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Protein
| Protein ID | pfu_aug2.0_715.1_17762.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_715.1_17762.t1 MAATLSFRWLDILEKEFDKAFVDLDLLLGEIDPDQCELTFDGRQKMTALSAAFAQLCHKAQTVFQSNAKLEAQMVDMRSD VVELRAAKEHVEQELHNVLLQLHSTQLQLQAEKGVEVDSTAIKKKVEEEMKSRTAEVSQLERMQAEMKELRRENEDLRQY VLALQGEVYGARLAAKYLDKELAGRIQQIQLLGRDMRGAEHDKLWNQLEAEIHLHRHKTVIRACRGRTTWKKKLPVPAGH DFHSLRRQHGLGDIRKVTLIKGEDDGLGLSITGGKEHGVPILISEIHEGQPADKCEALYVGDAILSVNGIDLRNSKHAEA VQILSQQTGNIELEVMFVSPDEDSDEENHGYEDEHGFRYRIYDEEVMSNSSDPDRREAIGQRSTADQPQVNGIPASPESK SQTPQRSSEERSLPNSPNRSSSNDKGVGSVQSQPIQNGQESAASPTFNSDYT |
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