Gene
| Gene Model ID | pfu_aug2.0_720.1_01078 |
|---|---|
| Locus | scaffold720.1 : 132759 ... 143665 : - |
| To GenomeBrowser | scaffold720.1:132759..143665 |
| Genes list of scaffold | scaffold720.1 |
| Synonym | pfu_aug1.0_51144.1_12731 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| toll-like receptor 13-like | GO:0007165 GO:0009617 GO:0052033 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_720.1_01078.t1 | 3 | 1 | LRR_8 | 95 | 151 | 5.3e-12 | 45.3 | 2.4e-12 | 6.0e-09 | 35.5 |
| pfu_aug2.0_720.1_01078.t1 | 3 | 2 | LRR_8 | 162 | 191 | 5.3e-12 | 45.3 | 7.2e-05 | 0.18 | 11.5 |
| pfu_aug2.0_720.1_01078.t1 | 3 | 3 | LRR_8 | 219 | 239 | 5.3e-12 | 45.3 | 0.25 | 630.0 | 0.2 |
| pfu_aug2.0_720.1_01078.t1 | 1 | 1 | TIR | 273 | 399 | 3.9e-19 | 68.4 | 2.9e-22 | 7.1e-19 | 67.6 |
| pfu_aug2.0_720.1_01078.t1 | 1 | 1 | TIR_2 | 291 | 373 | 6.7e-09 | 35.8 | 4.8e-12 | 1.2e-08 | 35.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_720.1_01078.t1 | gi|548538624|ref|XP_005752697.1| | PREDICTED: toll-like receptor 13-like isoform X2 [Pundamilia nyererei] | 2.0e-20 |
| pfu_aug2.0_720.1_01078.t1 | gi|291243836|ref|XP_002741808.1| | PREDICTED: toll-like receptor 2 type-2-like [Saccoglossus kowalevskii] | 1.0e-18 |
| pfu_aug2.0_720.1_01078.t1 | gi|260826992|ref|XP_002608449.1| | hypothetical protein BRAFLDRAFT_231890 [Branchiostoma floridae] | 1.0e-17 |
| pfu_aug2.0_720.1_01078.t1 | gi|260826988|ref|XP_002608447.1| | hypothetical protein BRAFLDRAFT_96585 [Branchiostoma floridae] | 2.0e-17 |
| pfu_aug2.0_720.1_01078.t1 | gi|548538621|ref|XP_005752696.1| | PREDICTED: toll-like receptor 13-like isoform X1 [Pundamilia nyererei] | 2.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_720.1_01078.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_720.1_01078.t1 atgcctcgcgttggctcagatgtttgcttgaaggggtccaaggagcaggaggaaaccagagtaccaggagaaaaaaaacc ctgcgaggcctcggtgggggaccacctaacctcccacataagacccttcgccgaatctgggattcgaactcgggagctta gagggactacacatggcatttgctctgactgttcaagagttcctattcctgatactttacacacatacgattgttccaaa tgcggtttaccagaggtgccgacttttcccaatacatctcgtgttattctactgtcttacaacaaaatatcggcgattag aagggaatccttccagtggctgtcggacttacgggatcttagtctagaatttaatgaaattcgccaagtagagagcgatt ctttccatgatttgaattcaatgataaaattgaatatttcctggaataaactcaagagtcttgatgatctagaaatgcca tcaagtctccagtccctcgacattcggatgaattactatacgaagtatccagattcaatacagaacttgacacagttaag agttttaaatatcgatattttcaccggtttttacttcgaccaaaattttctttcacttaccaatttgtcaattattactt tcaatccaagaagtgtcttttcgttgaaaaatgatacgtttgaaggattgggagattcacctctggaggaaataaacatt gattttaaaggtcacgtgagaaaaccaattgaaatagattttctgaaacccttccgattcctgaaacgattaagaatcag tatggacggattgtttgatgacgaggattgggttactggtcctttgtttcggtacttgaacaatgaactttcactgaaaa tatgtattcatcataaagattttataccgggtgagccgatagctgaagaaattctcagatgcatagattcaagtaggaaa tccgtgtttgtcatcactagacatttcctggccagtgattggagcttgtttgagatggacttagcgagacgccatgtttt tcaaagtgacagtgacacgatattagtcatactaaaagacgacatacccgttcacgagatgccaagcatgttaaggaaaa tatggtggagaatcgtctgtctaaagtttcctaataacaacgatgtttctgatattgaaatgttctggaaaaagctagct gaagtttttattagagagtga |
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Protein
| Protein ID | pfu_aug2.0_720.1_01078.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_720.1_01078.t1 MPRVGSDVCLKGSKEQEETRVPGEKKPCEASVGDHLTSHIRPFAESGIRTRELRGTTHGICSDCSRVPIPDTLHTYDCSK CGLPEVPTFPNTSRVILLSYNKISAIRRESFQWLSDLRDLSLEFNEIRQVESDSFHDLNSMIKLNISWNKLKSLDDLEMP SSLQSLDIRMNYYTKYPDSIQNLTQLRVLNIDIFTGFYFDQNFLSLTNLSIITFNPRSVFSLKNDTFEGLGDSPLEEINI DFKGHVRKPIEIDFLKPFRFLKRLRISMDGLFDDEDWVTGPLFRYLNNELSLKICIHHKDFIPGEPIAEEILRCIDSSRK SVFVITRHFLASDWSLFEMDLARRHVFQSDSDTILVILKDDIPVHEMPSMLRKIWWRIVCLKFPNNNDVSDIEMFWKKLA EVFIRE |
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