Gene
| Gene Model ID | pfu_aug2.0_73.1_10231 |
|---|---|
| Locus | scaffold73.1 : 512727 ... 559473 : + |
| To GenomeBrowser | scaffold73.1:512727..559473 |
| Genes list of scaffold | scaffold73.1 |
| Synonym | pfu_aug1.0_2046.1_29956 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| homeobox protein hox-b1b-like | GO:0005634 GO:0006355 GO:0043565 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_73.1_10231.t1 | 2 | 1 | Homeobox | 215 | 255 | 2.2e-11 | 43.1 | 5.6e-15 | 2.8e-11 | 42.8 |
| pfu_aug2.0_73.1_10231.t1 | 2 | 1 | C1q | 275 | 292 | 3.4e-24 | 85.2 | 1.1 | 5200.0 | -2.7 |
| pfu_aug2.0_73.1_10231.t1 | 2 | 2 | Homeobox | 301 | 314 | 2.2e-11 | 43.1 | 1.7 | 8200.0 | -3.5 |
| pfu_aug2.0_73.1_10231.t1 | 2 | 2 | C1q | 319 | 441 | 3.4e-24 | 85.2 | 1.2e-27 | 5.9e-24 | 84.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_73.1_10231.t1 | gi|551522807|ref|XP_005812891.1| | PREDICTED: homeobox protein Hox-B1b-like [Xiphophorus maculatus] | 1.0e-24 |
| pfu_aug2.0_73.1_10231.t1 | gi|676432016|ref|XP_009046437.1| | hypothetical protein LOTGIDRAFT_100648, partial [Lottia gigantea] | 1.0e-23 |
| pfu_aug2.0_73.1_10231.t1 | gi|742193628|ref|XP_010891332.1| | PREDICTED: homeobox protein Hox-A1 [Esox lucius] | 2.0e-23 |
| pfu_aug2.0_73.1_10231.t1 | gi|554805644|ref|XP_005913764.1| | PREDICTED: homeobox protein Hox-B1b-like isoform X1 [Haplochromis burtoni] | 3.0e-23 |
| pfu_aug2.0_73.1_10231.t1 | gi|617370803|ref|XP_007572588.1| | PREDICTED: homeobox protein Hox-B1 [Poecilia formosa] | 4.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_73.1_10231.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_73.1_10231.t1 atgaattcagaaggtgactacacgatttgtaatttagacagccattcttatggaaatagctacacatcgtccgacatacc aaacgcaatctatggatacggtaataatataagtgcacggacagttgacactggacagcaatattatggatctgaaaata tcatccctcatggactgtccggagttgacctctcgctgaccaatggtcaaggattaaactatcctgtgaattctgccgtg gcaccaagagtctcgcgtcaccaaggttatcatgatctgggggactctggtcagactcacatggtggacccctatcttac cccacatcacgggctggcgctcaatggagacgcccacatccccgggggtaacggaatgaacttatctcctggtcggggga gttacggtggctcttgtacggacaatttgacttcttgctcactttcaaacgtttatggggccacgattccaccacaagct cagtctccaataaaacaagaaccgtcaacgggacagaatttagcaagtaaaccgtatcggtggatgcaaataaaaagaaa tgcacctaaaccagctccaaaaccaactagtccagagtacggatatccccccacaaccggcggagcacctcagccaaata tgggtcggacgaattttacaaataaacagttgacggaattggagaaagaattccatttcaacaaatatctcacgagagcg aggcgaatcgagatcgccgcttctcttggtctgaacgagactcagcaccaacagcaaaatatcaaaacacagataagacg tacacagcaagagacacaaggaacaaggaacaagaaacacgaaatcatccaacacaaaagaccacacataaaccaacgag accaatggacaaccggtgccgacttaagaaggctatctgctaagttaggagcaaatgagagaaacagaacgtatgcgttc actgtatcaacttcatctattttgacaaattataatcacaagaaaatagtgtatgataaagtgatcaccaatataggagg agcctacaacagtaatacaggtatatttacctgtccctcacctggtacctatgtcttcacgtggtctaccttgtctggtt ctgcctcagaaaactgtgaagcgtacatctaccataacggtaacaggctgttaaagtcacacagttatgaatataacggc ggttactctgaggcagctagtaataccatactgctgtcactgactgtcggtgaccacttgtggatacagacacctgttgg tacacgctgttatggatatccttacacggcattctctggatggaaaatataa |
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Protein
| Protein ID | pfu_aug2.0_73.1_10231.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_73.1_10231.t1 MNSEGDYTICNLDSHSYGNSYTSSDIPNAIYGYGNNISARTVDTGQQYYGSENIIPHGLSGVDLSLTNGQGLNYPVNSAV APRVSRHQGYHDLGDSGQTHMVDPYLTPHHGLALNGDAHIPGGNGMNLSPGRGSYGGSCTDNLTSCSLSNVYGATIPPQA QSPIKQEPSTGQNLASKPYRWMQIKRNAPKPAPKPTSPEYGYPPTTGGAPQPNMGRTNFTNKQLTELEKEFHFNKYLTRA RRIEIAASLGLNETQHQQQNIKTQIRRTQQETQGTRNKKHEIIQHKRPHINQRDQWTTGADLRRLSAKLGANERNRTYAF TVSTSSILTNYNHKKIVYDKVITNIGGAYNSNTGIFTCPSPGTYVFTWSTLSGSASENCEAYIYHNGNRLLKSHSYEYNG GYSEAASNTILLSLTVGDHLWIQTPVGTRCYGYPYTAFSGWKI |
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