Gene
| Gene Model ID | pfu_aug2.0_734.1_14508 |
|---|---|
| Locus | scaffold734.1 : 79206 ... 107995 : - |
| To GenomeBrowser | scaffold734.1:79206..107995 |
| Genes list of scaffold | scaffold734.1 |
| Synonym | pfu_aug1.0_3375.1_37571 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_734.1_14508.t1 | 1 | 1 | Integrin_beta | 28 | 428 | 0.0 | 465.6 | 0.0 | 0.0 | 459.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_734.1_14508.t1 | gi|597736957|ref|XP_007230726.1| | PREDICTED: integrin beta-1-like [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_734.1_14508.t1 | gi|742164286|ref|XP_010883922.1| | PREDICTED: integrin beta-1-like isoform X2 [Esox lucius] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_734.1_14508.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_734.1_14508.t1 atgtgctcaaattctgtttatgtatttaaagatcctgcttcatttattcatggaggacaaaacgtgtgtctaggaaagaa aacctgcggcgagtgcattgcagctgataaacactgtgctttttgtacaagtttagattatgaatcacagaaccttgaac gttgtgatacagtagaaaaacaccaagctcaaggatgttcgttagctaatatacagtttccaaacagcacactacgtaca gttcagaacgatgatgttggcggtcaagggaatgcagcagtgcagatacagcctcaagtaatggatgtaaccctaaggcc aaatgaccctatgtctttcaaacttaaattccgattggctgagaagtatccaatagatctttattatttgatggatatgt caagatcaatggcggatgacaagcagacattagttaacatggtaccaattatagcaactgaaatgagaaaattttcagac gatttcagactcggatttggatcgttcgtcgacaagccaatttcgccgtatgcaagtaccccagaattaaataacctccc acttgacgcagatgaaaggaaattccaagactcggtgaatagaaccagaatttctttcaacattgacgcaccagagggag ggtttgatgcaataatgcaggtgtcaacatgcaataatgaaataggatggagggagagagctcggcacttgctactgttt tccaccgattctgcctatcacactgcgggagacggaaggctcggaggtattgtaaagggacatgatggggaatgtcacat gacgaacaatatgtatactgaaagcgtcaatcaggattatccttctgttggtcaagtggcagagagggtaaaagatgaga acatcaatgttatattcgcagtaactgacgttcaagtacctacctatgaaagacttcaaccatacatggctggatcacag ataggcagcatggacgacaactcggcaaatgttgctgacctactgacggataaatacttgaacataacttcagtggtaga acttcttgttgagggaaacgaggatgttgaagtaacatttcggacaaattgtactggtgattccgtgatggaaacaaaca gatgtgataacctccaaattggcgatgaagtaacatttgatgtaacaattactgccaaagaatgcacatctggttctcaa gggctctctcgtaagaacataacaatcaaaccagtcggactatcagatgccctgagtctcaatctagacatactctgtac gtgtgactgtgagagatctgggatcacggaaactctagaatgtaatgggaagggacagtgtgtgtgtggcacatgtgaat gcgaggatggatattacggacagaagtgaccacgaaaagatacatgttttgagtgtaatgccgctagttacattacaaaa gtagaacaacttgaagatgtcggcactgtgtgtaattaccttgatgaggatgactgtctcttccgtttctcctatgactt tgatgaagatcgtcagtatagaattaaagcattgacaataaaagaatgtcctcaagaggttgatgtattggccttagttc taggaattgtcggtgcgcttgtactcattggaatcataattttggtggcaattaaagtcttctttatggtcatggatagt agagaactgcagaagtttgaaatagaaaaacaaaaggcacaatgggaaaaaccggtatatgttgcatga |
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Protein
| Protein ID | pfu_aug2.0_734.1_14508.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_734.1_14508.t1 MCSNSVYVFKDPASFIHGGQNVCLGKKTCGECIAADKHCAFCTSLDYESQNLERCDTVEKHQAQGCSLANIQFPNSTLRT VQNDDVGGQGNAAVQIQPQVMDVTLRPNDPMSFKLKFRLAEKYPIDLYYLMDMSRSMADDKQTLVNMVPIIATEMRKFSD DFRLGFGSFVDKPISPYASTPELNNLPLDADERKFQDSVNRTRISFNIDAPEGGFDAIMQVSTCNNEIGWRERARHLLLF STDSAYHTAGDGRLGGIVKGHDGECHMTNNMYTESVNQDYPSVGQVAERVKDENINVIFAVTDVQVPTYERLQPYMAGSQ IGSMDDNSANVADLLTDKYLNITSVVELLVEGNEDVEVTFRTNCTGDSVMETNRCDNLQIGDEVTFDVTITAKECTSGSQ GLSRKNITIKPVGLSDALSLNLDILCTCDCERSGITETLECNGKGQCVCGTCECEDGYYGQKXPRKDTCFECNAASYITK VEQLEDVGTVCNYLDEDDCLFRFSYDFDEDRQYRIKALTIKECPQEVDVLALVLGIVGALVLIGIIILVAIKVFFMVMDS RELQKFEIEKQKAQWEKPVYVA |
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