Gene
| Gene Model ID | pfu_aug2.0_734.1_14511 |
|---|---|
| Locus | scaffold734.1 : 209380 ... 233569 : + |
| To GenomeBrowser | scaffold734.1:209380..233569 |
| Genes list of scaffold | scaffold734.1 |
| Synonym | pfu_aug1.0_1636.1_66054 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna mismatch repair protein mlh1 | GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_734.1_14511.t1 | 1 | 1 | DNA_mis_repair | 10 | 118 | 1.8e-32 | 111.2 | 3.3e-36 | 5.0e-32 | 109.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_734.1_14511.t1 | gi|512847992|ref|XP_002933455.2| | PREDICTED: DNA mismatch repair protein Mlh1 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_734.1_14511.t1 | gi|657797477|ref|XP_008325798.1| | PREDICTED: DNA mismatch repair protein Mlh1 [Cynoglossus semilaevis] | 0.0 |
| pfu_aug2.0_734.1_14511.t1 | gi|148229904|ref|NP_001090545.1| | mutL homolog 1 [Xenopus laevis] | 0.0 |
| pfu_aug2.0_734.1_14511.t1 | gi|641770353|ref|XP_008169399.1| | PREDICTED: DNA mismatch repair protein Mlh1 isoform X2 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_734.1_14511.t1 | gi|634861758|ref|XP_007943877.1| | PREDICTED: DNA mismatch repair protein Mlh1 isoform X4 [Orycteropus afer afer] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_734.1_14511.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_734.1_14511.t1 atgttcggtcctttcattttacatttcagggagctgttagaagtgaaacaagaagatagtaaactgatgttccgttgtca tggttacgttacaaatgccaactactccatgaagaagttgaccatccttcttttcatcaaccatcgattggtcgattcca gtgcattgaggaaagccttggatgctgtctatcagacctacttaccaaaacatacacacccgtttatctacctcagttta gagattgcccctcagaacgtggacgtgaacgtacaccccaccaaacacgaggtacacttcttacatgaggatgcagtcat tgagagcatacagaaagctgtggataccactctacttggctctaatacatcacgtacttattatacacaggcactcctac caaaaacttccatcgtcatagaagaggtcagcggtagcaaacctagctccagtacaggtcagtcatcagagacggtatat gcccatcaaatggttaggacagacagcagggagcagaaactagacgcatttataaagccgacaaatcagacgcaaaaaca gaagttgtcagatccctctacctcaaccaaacatgactctgaagtggaaacgcctatggaaacagattctcctaagacag acagcagggagcagaaactagacgcgtttataaagccaacaaatcagacgcaaaaacagaagtcgtcagatccctctacc tcaaccaaacatgactctgaagtggaaacgcccatggaaacagattcccctaagtatgttctatcaggtataaggcttgg tatgtcagtgtccagtttgccacagtgtggtgtacagccaaaatgccggagcattaaactgaccagtgtgttaaatctcc aaaaacagatcaaagattccatgcattcaggattacgagagatgttccaaaaccacaagtttgtaggctgtgtgaaccaa gaaatggccctgatgcaacatcagaccaaactttacctggtcaatacaactaagttaagtgctgaattgttctaccaact cctgatgtttgactttggaaattttggtatccttagactctctgagccagcaccgatatacgatctagccatgttagcgt tagatttagaggagagcggatggactccaacagacggacccaaagaaagtttggctcaatacatagtagacttcctgaaa agtaaagcagagatgttaaacgactacttttctatggaaatagatcaggatggtaacttatgtaccctgccactattact ggatgattatgtaccaagtatggaaagtttacctatgtttgtgctgagacttgccacagaggtaaattgggactcggaaa aagaatgctttgaaacgtttgctaaagaaacgagtgatttctactctatgaaaaagagtatgttcgaagatcagcaagat acaaatgaatctcaggaggaagaagaagaagcttcaacatggaaatggacaacagaacatgtgattttccaggcttttag aacactcttatctcctccaaggacatttgctgaggacactagtgttttacaaatagcaaatttacctgacttatacaaag tgtttgaacggtgctag |
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Protein
| Protein ID | pfu_aug2.0_734.1_14511.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_734.1_14511.t1 MFGPFILHFRELLEVKQEDSKLMFRCHGYVTNANYSMKKLTILLFINHRLVDSSALRKALDAVYQTYLPKHTHPFIYLSL EIAPQNVDVNVHPTKHEVHFLHEDAVIESIQKAVDTTLLGSNTSRTYYTQALLPKTSIVIEEVSGSKPSSSTGQSSETVY AHQMVRTDSREQKLDAFIKPTNQTQKQKLSDPSTSTKHDSEVETPMETDSPKTDSREQKLDAFIKPTNQTQKQKSSDPST STKHDSEVETPMETDSPKYVLSGIRLGMSVSSLPQCGVQPKCRSIKLTSVLNLQKQIKDSMHSGLREMFQNHKFVGCVNQ EMALMQHQTKLYLVNTTKLSAELFYQLLMFDFGNFGILRLSEPAPIYDLAMLALDLEESGWTPTDGPKESLAQYIVDFLK SKAEMLNDYFSMEIDQDGNLCTLPLLLDDYVPSMESLPMFVLRLATEVNWDSEKECFETFAKETSDFYSMKKSMFEDQQD TNESQEEEEEASTWKWTTEHVIFQAFRTLLSPPRTFAEDTSVLQIANLPDLYKVFERC |
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