Gene
| Gene Model ID | pfu_aug2.0_74.1_13547 |
|---|---|
| Locus | scaffold74.1 : 321374 ... 326208 : - |
| To GenomeBrowser | scaffold74.1:321374..326208 |
| Genes list of scaffold | scaffold74.1 |
| Synonym | pfu_aug1.0_5170.1_67184 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_74.1_13547.t1 | 1 | 1 | Exo_endo_phos_2 | 248 | 367 | 2.9e-19 | 68.8 | 1.5e-22 | 7.6e-19 | 67.4 |
| pfu_aug2.0_74.1_13547.t1 | 2 | 1 | RVT_1 | 649 | 770 | 3.39997e-41 | 140.9 | 9.5e-21 | 4.7e-17 | 62.0 |
| pfu_aug2.0_74.1_13547.t1 | 2 | 2 | RVT_1 | 770 | 892 | 3.39997e-41 | 140.9 | 2.2e-25 | 1.1e-21 | 77.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_74.1_13547.t1 | gi|449679882|ref|XP_004209444.1| | 0.0 | |
| pfu_aug2.0_74.1_13547.t1 | gi|449682632|ref|XP_004210132.1| | PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Hydra vulgaris] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_74.1_13547.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_74.1_13547.t1 atggataaaagtgacattatgtggttttgtggtccctgtagggaaaaagttgaaaagaacataattgttgatcgagaaat agaagaaaggtgtagagacatcatgcagaaatttgaaaagagaatgttatatgttgaggagcaaatcgagaaaaagtgtg atgaggatcaagtaaggagtataacacaggaggagatcgcaaaactacaggtaccagagggatcagaaaacagaagagac caggaacatatcgaagcaggggataatgtccgtgcagttatgtgcgagattaatgaaaggaaaaatcgtgaaaataacat gattgtatacggtttaaaggaaagcaactcagaagagaaagaatctcgacaaaaatatgatctagaacagatacaggaaa ttagcaagactgtcaacagactttcttttatctatacaaatgcagatcaactgaagaataaatttgacgagttccaacta cgaattcgggacattaagccgcttattataggaatcacagaggtaaaagcaaaaaatgcgacatatacgccaaatgctgc agaatattcaatagaatggacgaaggaatatagaatgtttcatacaaatgttgacaatacaactgggagagggatattac tatacattcatgagtcactatatgtagaggaggttaagatgcaggtacagtttgaggaaaatgtgtttgttaaaataaaa gtcagtaatgcagacaacatgcttgtgggagtaatatatcgatctccgtcagacaactcggagaggaaaaatgaaaattt aagagaacttcttatggaagcagcaaatgacagatattcacattgcattattatgggagattttaattacccgaatatca actgggatttgacctcaacaaaaaacgaaaattcagaggaacagaaattcttggattgcatacaggataattatttattc caagtgatcaataaaccaacacgatggagaggatcaaacatcccaagtatacttgacttggttataacacgggacgaaaa tgccatcgatgacattgaatatcaaagtccattggggaaaagtgatcactgtatgatatactttaactatgtatgcagca cattgatgagaagtattgtaaaaaggagacgaagctatgctaaagcaaacttcacaagcatgaaaagagaattcagcaat atggactgggaaaatatcttttcagctagtgattcggtggaagaaatgtggaaaaagttcagaaagaaactgcttgaaac tgaaaatatgtttgttccactagtaacagcaaaaaataatcagaaatcacaaacaccgctggataaggaaactctcaact taatcaaagagaaaacaaaactatctcggaaatctgttgcgactagagactcacaaatacggcagaaatacaataggaca agaaaccaagtagtaaaacgtgtgaggaaagcaaggaaacagtatgaaaaaggactggcagaagacgctaagaaaaatcc aaaaagaatatggcaatacataaactctaaaagtaagacaagacaggggataggagatctgtgtatcgatcctaagaatc caaaatctgaaaagacagaagatgaagaggaaaaagccaatatccttgcagaatttttcagtagtgtctttacagtagag ccagaaggtgaaataccgaaacttaaagaaagacaaataattgtgggatgggaaaatgtgcacataaaggaggaagacat cacaaaatatctaggtcaactaagaatagacaaatctccaggaatggatggaatacatcccaaaatactgaaagagctaa aagaagaattagcaaagccacttgcgatgatattcagaaaatcacttgaagataaagatataccggaagaatggaaaact gctcgcattagtgcaatattcaaaaagggaagcaaatccattgcagggaactatcgaccagtaagtctcacctcgatagt agggaaagttatggagaaacttgtcagaaatcatctactagaacacttcattacaaacagcctttttaccaacaaacaat acggatttatcggaggaagatcaacttcattgcaattactcagagtattagatgaatggactgaagctatagatgctggg aaagatgtagattgtgtatacatggactatcagaaagctttcgacactgtaccacataaacgattagtaagaaaattgga ggcatacggaatcggaaaggaaatgagagaatggatccagaactacttgagtgggaggaaacaacaagtttcgaaagctt tcgacactgtaccacataaacgattcgtaagaaaattggaggcatacggaatcggaaaggaaatgagagaatggatccag aactacttgagtgggaggaaacaacaagtttcggacaatggtcacacatctaaatggcatcatgtgacatccggcatccc acaagggaccgttctcggaccgatattgtttgtcatctataaaaacgatctaccggacactgttgactccacaatatact tgtttgctgacgatacgaagatattcaacataatagaagaacaagatgatagggagacattacaaagagatctcaacaag ttatcagactggagcaataaatggctattaaggacgcacttggattacgcaagttcagtgtggtttccgtacaaaaaagg acatgtagagctactagaaggagtccagagaagggcaactaaacagataccaggaatgaaaaatctcagctatgaggaaa gacttaggaagctgaaactaccaaccttgaaatatcgtaggaatagaggcgacatgatagaagtttataagataatcagc aagaaatacgacccagaggcatcaaacttcattatgttacggaaggaccatacagaaagagaaacaaacagagggaatac taagaaattgctagtgcagagaccaagattaaacatcaggaaatacagcttcagtgtcagagtaacgcatctttggaata gtttaccagaaagtgtagtcagtgcaaaaaccttgaataccttcaaaaaccgatga |
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Protein
| Protein ID | pfu_aug2.0_74.1_13547.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_74.1_13547.t1 MDKSDIMWFCGPCREKVEKNIIVDREIEERCRDIMQKFEKRMLYVEEQIEKKCDEDQVRSITQEEIAKLQVPEGSENRRD QEHIEAGDNVRAVMCEINERKNRENNMIVYGLKESNSEEKESRQKYDLEQIQEISKTVNRLSFIYTNADQLKNKFDEFQL RIRDIKPLIIGITEVKAKNATYTPNAAEYSIEWTKEYRMFHTNVDNTTGRGILLYIHESLYVEEVKMQVQFEENVFVKIK VSNADNMLVGVIYRSPSDNSERKNENLRELLMEAANDRYSHCIIMGDFNYPNINWDLTSTKNENSEEQKFLDCIQDNYLF QVINKPTRWRGSNIPSILDLVITRDENAIDDIEYQSPLGKSDHCMIYFNYVCSTLMRSIVKRRRSYAKANFTSMKREFSN MDWENIFSASDSVEEMWKKFRKKLLETENMFVPLVTAKNNQKSQTPLDKETLNLIKEKTKLSRKSVATRDSQIRQKYNRT RNQVVKRVRKARKQYEKGLAEDAKKNPKRIWQYINSKSKTRQGIGDLCIDPKNPKSEKTEDEEEKANILAEFFSSVFTVE PEGEIPKLKERQIIVGWENVHIKEEDITKYLGQLRIDKSPGMDGIHPKILKELKEELAKPLAMIFRKSLEDKDIPEEWKT ARISAIFKKGSKSIAGNYRPVSLTSIVGKVMEKLVRNHLLEHFITNSLFTNKQYGFIGGRSTSLQLLRVLDEWTEAIDAG KDVDCVYMDYQKAFDTVPHKRLVRKLEAYGIGKEMREWIQNYLSGRKQQVSKAFDTVPHKRFVRKLEAYGIGKEMREWIQ NYLSGRKQQVSDNGHTSKWHHVTSGIPQGTVLGPILFVIYKNDLPDTVDSTIYLFADDTKIFNIIEEQDDRETLQRDLNK LSDWSNKWLLRTHLDYASSVWFPYKKGHVELLEGVQRRATKQIPGMKNLSYEERLRKLKLPTLKYRRNRGDMIEVYKIIS KKYDPEASNFIMLRKDHTERETNRGNTKKLLVQRPRLNIRKYSFSVRVTHLWNSLPESVVSAKTLNTFKNR |
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