Gene
| Gene Model ID | pfu_aug2.0_740.1_01088 |
|---|---|
| Locus | scaffold740.1 : 6308 ... 25005 : - |
| To GenomeBrowser | scaffold740.1:6308..25005 |
| Genes list of scaffold | scaffold740.1 |
| Synonym | pfu_aug1.0_5161.1_59725 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_740.1_01088.t1 | 3 | 1 | C1q | 20 | 125 | 0.0 | 196.5 | 2.5e-21 | 1.7e-18 | 66.8 |
| pfu_aug2.0_740.1_01088.t1 | 3 | 2 | C1q | 217 | 322 | 0.0 | 196.5 | 1.1e-21 | 7.5e-19 | 67.9 |
| pfu_aug2.0_740.1_01088.t1 | 3 | 3 | C1q | 417 | 552 | 0.0 | 196.5 | 2.3e-19 | 1.6e-16 | 60.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_740.1_01088.t1 | gi|667325464|ref|XP_008589547.1| | PREDICTED: C1q-related factor, partial [Galeopterus variegatus] | 1.0e-09 |
| pfu_aug2.0_740.1_01088.t1 | gi|556991745|ref|XP_006000387.1| | PREDICTED: C1q-related factor [Latimeria chalumnae] | 2.0e-09 |
| pfu_aug2.0_740.1_01088.t1 | gi|504175653|ref|XP_004597337.1| | PREDICTED: C1q-related factor [Ochotona princeps] | 2.0e-09 |
| pfu_aug2.0_740.1_01088.t1 | gi|118403832|ref|NP_001072144.1| | C1q-related factor precursor [Sus scrofa] | 2.0e-09 |
| pfu_aug2.0_740.1_01088.t1 | gi|594042199|ref|XP_006045637.1| | PREDICTED: C1q-related factor [Bubalus bubalis] | 2.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_740.1_01088.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_740.1_01088.t1 atgaaaaggttacttagcggagtacaaaatacaacctctgattcgacacgtgtgtcattctacgcccatctatcgaagaa tgtagctggtataggagtgcaccacacaatcgtattcgacactttgcgatataacgatgggaatgcttataacaagtttg acggaatattcaccactaaaataccgggaacttacttctttatttggacaatttctgcaagtgatcaaaataccatggaa acggaacttgtcgttaatggtgtggtattcggacatgttattggagattcggctaaccactatgattggagtgtagcaac aggtttcgtcattgttaaacttagcgttgatgatacggtgtggatacgttctggaccggagctaatagaacgggtgggga gtttggaggagaaaataaaggaaataccaaaacttaaacaaagaatacaacaatgcgaggtgggattaaggaatatatcg acaagcaaaataagtgataagagatttttacaagacggtgtgccagaaatagtttcagagtcgactcatgtatcattcta cgcccatctgtccaagaatgtcgccgattacaaaagagttttactagaaggtttgccagatacaaactcagagtcgactc gtgtatcattctacgcccatctatccaagaatttagccggtataggagtgcaccacccaatcgtattcgataccgtgcgt tacaatgatgggaatgcttataacaaggtcgacggagaattcacggctaacgttccgggaacttacttctttatctggac aatatctgcacgtgatcgcacgtacatggaaacagagcttgtcgtaaatggcgttgtattcggacatgttattggagatg cggctgaccacgatgactggggtgtagcaacaggttttgtcattgttcgactcaatcttaatgacacagtgtggattcgt tctggacctgtgaacaatggtcagttgacgggtaccggttatgaatcgaaagttcagcgattggaacacttagaatcgaa agttcagcgattggaacacttagaatcgaaagttcagcgattggaacacttagaatcgaaagttcagaacttacagtcgg aggtgcggtccctgagagttgaaaataatttgttaaaggacggattaaaagattacagaagaaatactaaagatatcaaa agaggcattggagatagtcttatttcaggtcaggtttcctctgttttcgccttctctgcagaactgacccaaaatatgaa ccaaaaaatcggacaatcccatgtctttgtctatgatcacgtggaatgtaattatgggggagcctatagcaacatcagtg gtatattcacggcaccaaaatcagggatctttgcttttctatggactatcatggcagaaggtacaaatgacggaacggaa aaggcctatggcgaggtagacacagagctggtagtcaactcagaagtaagaagacgagtccgcactgacacagaggtaca tgctgacgatgaccaggctacaggatttgttatcgttcacttaaatcagggtgatttggtatttattcggtctcagtatg ttccacagggcaacttgcaagtgaattacagaggtggctggacattctcgggatggcaaattgcatga |
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Protein
| Protein ID | pfu_aug2.0_740.1_01088.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_740.1_01088.t1 MKRLLSGVQNTTSDSTRVSFYAHLSKNVAGIGVHHTIVFDTLRYNDGNAYNKFDGIFTTKIPGTYFFIWTISASDQNTME TELVVNGVVFGHVIGDSANHYDWSVATGFVIVKLSVDDTVWIRSGPELIERVGSLEEKIKEIPKLKQRIQQCEVGLRNIS TSKISDKRFLQDGVPEIVSESTHVSFYAHLSKNVADYKRVLLEGLPDTNSESTRVSFYAHLSKNLAGIGVHHPIVFDTVR YNDGNAYNKVDGEFTANVPGTYFFIWTISARDRTYMETELVVNGVVFGHVIGDAADHDDWGVATGFVIVRLNLNDTVWIR SGPVNNGQLTGTGYESKVQRLEHLESKVQRLEHLESKVQRLEHLESKVQNLQSEVRSLRVENNLLKDGLKDYRRNTKDIK RGIGDSLISGQVSSVFAFSAELTQNMNQKIGQSHVFVYDHVECNYGGAYSNISGIFTAPKSGIFAFLWTIMAEGTNDGTE KAYGEVDTELVVNSEVRRRVRTDTEVHADDDQATGFVIVHLNQGDLVFIRSQYVPQGNLQVNYRGGWTFSGWQIA |
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