Gene
| Gene Model ID | pfu_aug2.0_740.1_01089 |
|---|---|
| Locus | scaffold740.1 : 33273 ... 73306 : - |
| To GenomeBrowser | scaffold740.1:33273..73306 |
| Genes list of scaffold | scaffold740.1 |
| Synonym | pfu_aug1.0_5444.1_52539 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna replication atp-dependent helicase nuclease dna2 | GO:0006260 GO:0016787 GO:0044763 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_740.1_01089.t1 | 1 | 1 | Dna2 | 132 | 333 | 0.0 | 209.8 | 0.0 | 0.0 | 208.6 |
| pfu_aug2.0_740.1_01089.t1 | 1 | 1 | PDDEXK_1 | 211 | 449 | 7.2e-06 | 25.5 | 1.4e-08 | 1.3e-05 | 24.7 |
| pfu_aug2.0_740.1_01089.t1 | 3 | 1 | AAA_11 | 675 | 769 | 2.2e-39 | 135.4 | 5.5e-20 | 5.1e-17 | 62.2 |
| pfu_aug2.0_740.1_01089.t1 | 2 | 1 | AAA_30 | 675 | 851 | 2.1e-11 | 43.7 | 2.5e-13 | 2.4e-10 | 40.3 |
| pfu_aug2.0_740.1_01089.t1 | 1 | 1 | AAA_19 | 691 | 738 | 1.6e-07 | 30.9 | 4.2e-10 | 3.9e-07 | 29.7 |
| pfu_aug2.0_740.1_01089.t1 | 3 | 1 | Viral_helicase1 | 694 | 717 | 4.1e-07 | 29.7 | 0.0016 | 1.5 | 8.3 |
| pfu_aug2.0_740.1_01089.t1 | 3 | 2 | AAA_11 | 777 | 845 | 2.2e-39 | 135.4 | 3.6e-22 | 3.4e-19 | 69.3 |
| pfu_aug2.0_740.1_01089.t1 | 3 | 2 | Viral_helicase1 | 799 | 842 | 4.1e-07 | 29.7 | 0.0024 | 2.2 | 7.7 |
| pfu_aug2.0_740.1_01089.t1 | 1 | 1 | AAA_12 | 847 | 1034 | 5.19994e-41 | 140.2 | 1.4013e-43 | 1.3e-40 | 138.9 |
| pfu_aug2.0_740.1_01089.t1 | 3 | 3 | Viral_helicase1 | 947 | 1031 | 4.1e-07 | 29.7 | 0.00037 | 0.34 | 10.3 |
| pfu_aug2.0_740.1_01089.t1 | 2 | 2 | AAA_30 | 1013 | 1038 | 2.1e-11 | 43.7 | 0.5 | 460.0 | 0.2 |
| pfu_aug2.0_740.1_01089.t1 | 3 | 3 | AAA_11 | 1020 | 1036 | 2.2e-39 | 135.4 | 0.41 | 380.0 | 0.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_740.1_01089.t1 | gi|524887723|ref|XP_005100445.1| | PREDICTED: DNA replication ATP-dependent helicase/nuclease DNA2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_740.1_01089.t1 | gi|674049417|ref|XP_008830883.1| | PREDICTED: DNA replication ATP-dependent helicase/nuclease DNA2 [Nannospalax galili] | 0.0 |
| pfu_aug2.0_740.1_01089.t1 | gi|562839686|ref|XP_006149000.1| | PREDICTED: DNA replication ATP-dependent helicase/nuclease DNA2 [Tupaia chinensis] | 0.0 |
| pfu_aug2.0_740.1_01089.t1 | gi|701290903|ref|XP_010020262.1| | PREDICTED: DNA replication ATP-dependent helicase/nuclease DNA2, partial [Nestor notabilis] | 0.0 |
| pfu_aug2.0_740.1_01089.t1 | gi|395501406|ref|XP_003755086.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_740.1_01089.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_740.1_01089.t1 atgggcaaactcaaaaagaaatcaccagcaaagcaggaggatggccagaagaaaatatccagtttctttcagaaaggcgg tacaaaaccagtttctagttctctttttaccactactggaaactctaacagtaatggtggatccaaactgacgctgaaga aacctactaatggtaaaactaggtacacagaaactaaagagagggacaaagacatcagctgtaaacagaaaaaggttgca tactttgtgctaaggccatacctgtttatttctttgtttaagatcagcatgggagtttgtaatgtggcaccttgtgttaa ctttggtcgccatgtagtgacggcagtgaacactctacaagatcacagactagaacttcagctgaatgattacaacagtg gggagaggaggtcctgtgtactgggtggattctggtctgatacccatgtgtttgagggtgacattgtccatatcctggct aattttgatcaagatggagtctgtaatattgatgacaaggagggactcatcattgtgaaccctgacctcttgttgtcagg gacaacggttgtgtccagtgttttctgtatgagaaagtccgtcttgaatgaaaaatttaagggtattgacaagggtaacg tacagatgttgtacggcagtataattcatcaagtcttccagcaggttttgaggaaacagattttcgaagaagataagatc ttaaaagaagcagaagacactgtaaaacaactcaaatttctacatgatatgtacggaagtaatgttatagagagtgaagt tttagaagagatcaaaaagtacatccctcccctacagaaatggttacaacagtacactaccatcggcaagaatatcctag gggctcagaggaaggctgacagtgacatcgcaatactcaaggtcaaggacattgaggagaatatctggtcgccaagatat ggggtaaaaggaaaaatagatttaacagtggaggtcaagatcagaaagaaaaatatcatagaacatatgactgtgccatt agagttaaaaactgggagagctaccttttctatggagcataaaggacaggtcacattatacagtatgatgagttcagata ggagagaagacccaggtcaaggtcttttactttatctaaaagaacctgacatgaaggtcatatcagctgatcacctcaat aagagaggtttactccaattacgcaatgagatggcctattacctcagcaggcaggtgttgaaatcctgtgagatgggttc taactcatacacacttggaagattacctgaacctatcaacaacccaagggcatgtagcaagtgtcctcagctacttaatt gttctctttatcagaaagctatagagcagagagaccattcacccagtcataccatggctacattagttcccaagaccctg gcacatcttacacaggaccaccttgactacttcacacactggtgtttgttattagacctagagatgaaaagtggtctaaa gcatggagggctcaaagacatatggtgtaaatctggaaaagaaagggaagatttgggagaagctatcagtggactgacat tggataattcacagcttaatgaagaagacagtgaacagatatttattaagtttcatagggagaagagcttatcaagttgc agtctggggaaacacgaatacgttattgtatcgagtgagaacacgtcacacatagctgtatgtatgggtaccatcacgga cattacagatacctacatagtactactgacagaaagagagacactgcccagattgagggagctaagtaataccgtatata gaattgacaaatatgacgggtataatacgtcatccatactgtactgtaatctatctaatatactccaggaccaacccaac tgctgcagactaagagagttgatcataggaaaaaagaaaccagaatttgtaaacaaaatgtcaaaaggagaaattgaaaa agtgaagtctgtattcaagccgctgaacaaaccacagaaaacagctatcttaaaggtgttaatggccaaagattacgtat taatcaaaggttaccctggtacaggtaaaacttccactattgtgtcgttggttcgagtcttggtaactctggaaaagtct gtactgttgaccagctatacacattctgctgtggataacatcttattaaaacttaaaaaggttggagtgaattttcttcg gctagggaaagtgagtaaggttcatgctgatatacagccatatactgcagagagacaggctcagggattaacatccgtgg gagaacttagggaattctacaattctcagaaaattgtagctaccagtagcctcggaatcaatcatccacttttcacccat cgtagatttgacgtctgtatcattgacgaggcgtcacagattcttcagcctgcttctatagggccactgttcagtgccga caagtttgtccttgtaggtgaccccaaacaactcccacctgtgatacaaagcaaggaggccagggacattatgtacctga gtaacaccttggtatataacggtgcattgagatgtggttctgatgaagtagccaatcacagactgatcttccctgatccg caatgtgtcgccaaggtattggatgaagaaccttggttagcaccagtattaggaatggagccctataaagctgctgtttt cataaacacggaacatattcaagctcatgaggaacgtgatcgcgctgggctgataaaaaatgttacagagagtcgtctgg tatgctccatcacacaatcgtgtgtcaagtgtggtatagagcagagtgatataggagttatagccccttaccgtcaccag gtggcgctgataaagaatgaccttcggaatttcccagatgtagaagttaatacagtagatcagtatcagggtcgggacaa agatgtcattattatttccttcaccagaagtttttccaactcaaacgaggcagagagcaagtctggacagctcctgaaag acatcagaagattgaatgtggctatcactcgtgctaagaagaagctgatcatgattggtgatatacgtacacttaaacgg tacagtcctcttaaacagatcatagatatgatggaacacatgcaggcagtatccttttttaaagctatggtctttgaatg a |
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Protein
| Protein ID | pfu_aug2.0_740.1_01089.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_740.1_01089.t1 MGKLKKKSPAKQEDGQKKISSFFQKGGTKPVSSSLFTTTGNSNSNGGSKLTLKKPTNGKTRYTETKERDKDISCKQKKVA YFVLRPYLFISLFKISMGVCNVAPCVNFGRHVVTAVNTLQDHRLELQLNDYNSGERRSCVLGGFWSDTHVFEGDIVHILA NFDQDGVCNIDDKEGLIIVNPDLLLSGTTVVSSVFCMRKSVLNEKFKGIDKGNVQMLYGSIIHQVFQQVLRKQIFEEDKI LKEAEDTVKQLKFLHDMYGSNVIESEVLEEIKKYIPPLQKWLQQYTTIGKNILGAQRKADSDIAILKVKDIEENIWSPRY GVKGKIDLTVEVKIRKKNIIEHMTVPLELKTGRATFSMEHKGQVTLYSMMSSDRREDPGQGLLLYLKEPDMKVISADHLN KRGLLQLRNEMAYYLSRQVLKSCEMGSNSYTLGRLPEPINNPRACSKCPQLLNCSLYQKAIEQRDHSPSHTMATLVPKTL AHLTQDHLDYFTHWCLLLDLEMKSGLKHGGLKDIWCKSGKEREDLGEAISGLTLDNSQLNEEDSEQIFIKFHREKSLSSC SLGKHEYVIVSSENTSHIAVCMGTITDITDTYIVLLTERETLPRLRELSNTVYRIDKYDGYNTSSILYCNLSNILQDQPN CCRLRELIIGKKKPEFVNKMSKGEIEKVKSVFKPLNKPQKTAILKVLMAKDYVLIKGYPGTGKTSTIVSLVRVLVTLEKS VLLTSYTHSAVDNILLKLKKVGVNFLRLGKVSKVHADIQPYTAERQAQGLTSVGELREFYNSQKIVATSSLGINHPLFTH RRFDVCIIDEASQILQPASIGPLFSADKFVLVGDPKQLPPVIQSKEARDIMYLSNTLVYNGALRCGSDEVANHRLIFPDP QCVAKVLDEEPWLAPVLGMEPYKAAVFINTEHIQAHEERDRAGLIKNVTESRLVCSITQSCVKCGIEQSDIGVIAPYRHQ VALIKNDLRNFPDVEVNTVDQYQGRDKDVIIISFTRSFSNSNEAESKSGQLLKDIRRLNVAITRAKKKLIMIGDIRTLKR YSPLKQIIDMMEHMQAVSFFKAMVFE |
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