Gene
| Gene Model ID | pfu_aug2.0_740.1_01092 |
|---|---|
| Locus | scaffold740.1 : 133838 ... 141076 : - |
| To GenomeBrowser | scaffold740.1:133838..141076 |
| Genes list of scaffold | scaffold740.1 |
| Synonym | pfu_aug1.0_1750.1_37103 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tumor suppressor candidate 2 | GO:0001817 GO:0002376 GO:0030154 GO:0044403 GO:0048856 GO:0050829 GO:0065008 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_740.1_01092.t1 | 1 | 1 | TUSC2 | 23 | 103 | 3.6e-27 | 94.6 | 5.5e-31 | 4.1e-27 | 94.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_740.1_01092.t1 | gi|602627560|ref|XP_007420725.1| | PREDICTED: tumor suppressor candidate 2 isoform X2 [Python bivittatus] | 2.0e-23 |
| pfu_aug2.0_740.1_01092.t1 | gi|602627564|ref|XP_007420727.1| | PREDICTED: tumor suppressor candidate 2 isoform X4 [Python bivittatus] | 1.0e-22 |
| pfu_aug2.0_740.1_01092.t1 | gi|602627558|ref|XP_007420724.1| | PREDICTED: tumor suppressor candidate 2 isoform X1 [Python bivittatus] | 1.0e-22 |
| pfu_aug2.0_740.1_01092.t1 | gi|327265623|ref|XP_003217607.1| | PREDICTED: tumor suppressor candidate 2 [Anolis carolinensis] | 4.0e-22 |
| pfu_aug2.0_740.1_01092.t1 | gi|556948496|ref|XP_005987078.1| | PREDICTED: tumor suppressor candidate 2 [Latimeria chalumnae] | 6.0e-22 |
Transcript
| Transcript ID | pfu_aug2.0_740.1_01092.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_740.1_01092.t1 atggggcaacaaacatcttctatcgctcggaaagtgtcaagatctgtctcctctctctttggtgttaccagtaataatga aaccacatcgatatcaacggctcacctcgctgtaacaccgttcgtgttcaaacgccaagggtcaatgtactttgatgaag atggtgatcttgctcatgctttttatatagagaaaaacagtaatggctgtgccaaaatggttcagacctgggataattta tatccacaaggagaagtagatctaccccaccctcgactgaacgtagactttcctatcatattatgcgaggctcccctatc ctga |
|
Protein
| Protein ID | pfu_aug2.0_740.1_01092.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_740.1_01092.t1 MGQQTSSIARKVSRSVSSLFGVTSNNETTSISTAHLAVTPFVFKRQGSMYFDEDGDLAHAFYIEKNSNGCAKMVQTWDNL YPQGEVDLPHPRLNVDFPIILCEAPLS |
|