Gene
| Gene Model ID | pfu_aug2.0_7408.1_29575 |
|---|---|
| Locus | scaffold7408.1 : 1416 ... 2360 : + |
| To GenomeBrowser | scaffold7408.1:1416..2360 |
| Genes list of scaffold | scaffold7408.1 |
| Synonym | pfu_aug1.0_16257.1_32669 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_7408.1_29575.t1 | 1 | 1 | VMA21 | 10 | 74 | 5.4e-16 | 58.2 | 2.6e-19 | 6.3e-16 | 58.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_7408.1_29575.t1 | gi|676460001|ref|XP_009055481.1| | hypothetical protein LOTGIDRAFT_209403 [Lottia gigantea] | 1.0e-20 |
| pfu_aug2.0_7408.1_29575.t1 | gi|395507240|ref|XP_003757935.1| | 2.0e-19 | |
| pfu_aug2.0_7408.1_29575.t1 | gi|611980582|ref|XP_007476220.1| | PREDICTED: vacuolar ATPase assembly integral membrane protein VMA21-like isoform X1 [Monodelphis domestica] | 4.0e-19 |
| pfu_aug2.0_7408.1_29575.t1 | gi|591370686|ref|XP_007060166.1| | PREDICTED: vacuolar ATPase assembly integral membrane protein VMA21 [Chelonia mydas] | 4.0e-12 |
| pfu_aug2.0_7408.1_29575.t1 | gi|694986561|ref|XP_009438049.1| | PREDICTED: vacuolar ATPase assembly integral membrane protein VMA21 isoform X2 [Pan troglodytes] | 3.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_7408.1_29575.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7408.1_29575.t1 atgatgggtaatgatgaagcacagaacaatagtgtgatgaaaaccatgattctgttcagctttgccatgcttttcttacc aattttcctatactttttcagtaaaagtatgttttttgaaggtgttatgggaatgtccagtcaaaacagttatttctacg cagcctttgttgccataggaacagtacatattatattgggattgtttgtttataaagcatttactgaaggaacttccaca agtaggactacagaattcaaagtggattga |
|
Protein
| Protein ID | pfu_aug2.0_7408.1_29575.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7408.1_29575.t1 MMGNDEAQNNSVMKTMILFSFAMLFLPIFLYFFSKSMFFEGVMGMSSQNSYFYAAFVAIGTVHIILGLFVYKAFTEGTST SRTTEFKVD |
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