Gene
| Gene Model ID | pfu_aug2.0_744.1_14520 |
|---|---|
| Locus | scaffold744.1 : 218677 ... 237397 : + |
| To GenomeBrowser | scaffold744.1:218677..237397 |
| Genes list of scaffold | scaffold744.1 |
| Synonym | pfu_aug1.0_7146.1_52898 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_744.1_14520.t1 | 3 | 1 | Paf1 | 24 | 112 | 0.0 | 210.6 | 9.5e-32 | 4.7e-28 | 98.1 |
| pfu_aug2.0_744.1_14520.t1 | 3 | 2 | Paf1 | 114 | 245 | 0.0 | 210.6 | 1.0e-38 | 5.0e-35 | 121.0 |
| pfu_aug2.0_744.1_14520.t1 | 3 | 3 | Paf1 | 258 | 314 | 0.0 | 210.6 | 3.0 | 15000.0 | -15.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_744.1_14520.t1 | gi|676451701|ref|XP_009052792.1| | hypothetical protein LOTGIDRAFT_115833, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_744.1_14520.t1 | gi|524869238|ref|XP_005091415.1| | PREDICTED: RNA polymerase II-associated factor 1 homolog [Aplysia californica] | 0.0 |
| pfu_aug2.0_744.1_14520.t1 | gi|242010931|ref|XP_002426211.1| | RNA polymerase-associated protein, putative [Pediculus humanus corporis] | 0.0 |
| pfu_aug2.0_744.1_14520.t1 | gi|749784545|ref|XP_011146116.1| | PREDICTED: RNA polymerase II-associated factor 1 homolog [Harpegnathos saltator] | 0.0 |
| pfu_aug2.0_744.1_14520.t1 | gi|572267565|ref|XP_006611852.1| | PREDICTED: RNA polymerase II-associated factor 1 homolog isoform X2 [Apis dorsata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_744.1_14520.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_744.1_14520.t1 atgccgcctacagtacagacgggtcccagagaggacagagatcgtaaaagagggactggggaacgccgatctgagttagt atgccgtgtgaaatacaacaacacattgcctgatattccctttgatccaaaattcatcacctatccattcgagtcacaca gatttgttgattacaagcctacatctttagagagaagttataagtatgacctattgacagaacatgaccttggggtcact attgacctaatcaaccctgatacctacagaatagagccaggatcttatcttgaccaggaagatgaacggctattggagga ggatctcaccacacctaacgatgctaaaagagttggatttcggataaagcagattatgaaagatgaagacgtgtacaaag acagagaaagtcagatacgggctatagataaaacatttgataaggccaaggaacctataactaagcatcacagtaagcct ggtgttactccactagaggtcctaccagtgtatcctgactttgagttatggaagcatccatttgctcaggttatatttga ttctgatcccgcacctaaaggccgatcccagccagcacagatggaggaaatgtcacaggctatgatcaggggagctgtag attctggaggtgaacagtttgtagcgtatttcttacctacagacgaaactctgacaaaaaggaaacgagatgccgaagat gaagtggaatatgaatccagaatgctgatgcttgaaccacaacaagaggaggaagaagaagaagttcaagatgaacagtt tggagataatctcgatatggatcagttcaagagtgccagtgaagatgaaggaagtgttaagtcgggaggaagccgacgga gtcgcagcagaagtcgaagtggaagtaggtcaggaagtggtagcaggagcggtagtggaagtagaagtaggtcacgcagc ggtagccgatccaggagtcgtagtagaagtaaaagtggtagtagaagtaggagtggaagcaggagtaggagcccgtctcc ggctaaaagtggaagcagcagcgagagcgagagtgaaccagagaaagacaagggcaagaaagacgaggaagaaatctttg gttcggctagcagctcggacgaagactga |
|
Protein
| Protein ID | pfu_aug2.0_744.1_14520.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_744.1_14520.t1 MPPTVQTGPREDRDRKRGTGERRSELVCRVKYNNTLPDIPFDPKFITYPFESHRFVDYKPTSLERSYKYDLLTEHDLGVT IDLINPDTYRIEPGSYLDQEDERLLEEDLTTPNDAKRVGFRIKQIMKDEDVYKDRESQIRAIDKTFDKAKEPITKHHSKP GVTPLEVLPVYPDFELWKHPFAQVIFDSDPAPKGRSQPAQMEEMSQAMIRGAVDSGGEQFVAYFLPTDETLTKRKRDAED EVEYESRMLMLEPQQEEEEEEVQDEQFGDNLDMDQFKSASEDEGSVKSGGSRRSRSRSRSGSRSGSGSRSGSGSRSRSRS GSRSRSRSRSKSGSRSRSGSRSRSPSPAKSGSSSESESEPEKDKGKKDEEEIFGSASSSDED |
|