Gene
| Gene Model ID | pfu_aug2.0_746.1_21113 |
|---|---|
| Locus | scaffold746.1 : 201647 ... 209045 : - |
| To GenomeBrowser | scaffold746.1:201647..209045 |
| Genes list of scaffold | scaffold746.1 |
| Synonym | pfu_aug1.0_277.1_07465 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_746.1_21113.t1 | 4 | 1 | DUF2040 | 65 | 180 | 5.3e-37 | 126.5 | 3.50002e-41 | 5.3e-37 | 126.5 |
| pfu_aug2.0_746.1_21113.t1 | 4 | 2 | DUF2040 | 200 | 227 | 5.3e-37 | 126.5 | 1.0 | 15000.0 | -6.6 |
| pfu_aug2.0_746.1_21113.t1 | 4 | 3 | DUF2040 | 237 | 313 | 5.3e-37 | 126.5 | 1.0 | 15000.0 | -18.5 |
| pfu_aug2.0_746.1_21113.t1 | 4 | 4 | DUF2040 | 356 | 393 | 5.3e-37 | 126.5 | 0.078 | 1200.0 | -0.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_746.1_21113.t1 | gi|734619975|ref|XP_010737814.1| | PREDICTED: nuclear speckle splicing regulatory protein 1 [Larimichthys crocea] | 2.99878e-43 |
| pfu_aug2.0_746.1_21113.t1 | gi|585671692|ref|XP_002735998.2| | PREDICTED: nuclear speckle splicing regulatory protein 1-like [Saccoglossus kowalevskii] | 1.99965e-42 |
| pfu_aug2.0_746.1_21113.t1 | gi|109819857|sp|Q568R1.2|NSRP1_DANRE | Nuclear speckle splicing regulatory protein 1 | 1.99993e-41 |
| pfu_aug2.0_746.1_21113.t1 | gi|62202136|gb|AAH92757.1| | Zgc:152777 protein [Danio rerio] | 1.99993e-41 |
| pfu_aug2.0_746.1_21113.t1 | gi|116812569|ref|NP_001070898.1| | nuclear speckle splicing regulatory protein 1 [Danio rerio] | 1.99993e-41 |
Transcript
| Transcript ID | pfu_aug2.0_746.1_21113.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_746.1_21113.t1 atggttagcccatccttcgaaccagtccccttggtatttagggggagcaagtatggactgttgatgcctaagaagaaaga atccagcttggtgaaatctaatgtattcggagatgacagtgatgaagaagacccccatgcagctgttaatacagatatta agaagcaagcgctacaagcaaaagtcaaaagacagacccagatgcagatagacaaggctttggagcaggatcctactgtg tatgattatgatggggtatacgattctctgaaagcagaaaaagaagaaaaaaatgcagcagtcaaacaaaaagcagaaaa gaagccaaggtatatccaaggtctgatgaaagctgcagaacaaagaaaaagggaagacgaaagaagacaagaaagaaaag ttcagaaggaaagagagaaagaaggaggagagtttgatgacaaggatgtatttataacaggggcatacagaaagaagatg caggagatgcaagaactagaagaaaaagagagaagagaagctgagatggaagaagtattttactcttacaacagagagga gaattcatcttcgtcagaggagagtgaagaagaagaaagaaatggaagccacaagaaagactcacataatcataggtcac tgaaggagtcaaggtcaaatagagataggtcaaattcccgtgaaagagttagaggtgaaggacatagtagaaaggacaga aaaagatcaaaatctgttgatagagagaaaagccataggaggaaagataggtcaagatcgagagacagaaatagagagag aaagaggtcaaggtcaaaggaaagggatagtgacagacataggtattctggagtttcgagtgataagaaacatagaagaa tagaagatgaaatggaccagtcttctagaagtaagcatgacagtaggaaacgaaaatctgaagatagagactcaaaacag gagaaaaatttgaagaagagaagtatagaagaagaacatgaggaagaagaaatgattttaccacaacctcctccaagtga ggaggattcaacaaaagatgagggagttcaaaagactaatactggaagtgaagctaaatattctaagaaaacgtcagaat ctgatgctgatgctgctaggaggaggtacctagaacggaaattggcaaaagaaagggcaagactggctcaacaacaataa |
|
Protein
| Protein ID | pfu_aug2.0_746.1_21113.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_746.1_21113.t1 MVSPSFEPVPLVFRGSKYGLLMPKKKESSLVKSNVFGDDSDEEDPHAAVNTDIKKQALQAKVKRQTQMQIDKALEQDPTV YDYDGVYDSLKAEKEEKNAAVKQKAEKKPRYIQGLMKAAEQRKREDERRQERKVQKEREKEGGEFDDKDVFITGAYRKKM QEMQELEEKERREAEMEEVFYSYNREENSSSSEESEEEERNGSHKKDSHNHRSLKESRSNRDRSNSRERVRGEGHSRKDR KRSKSVDREKSHRRKDRSRSRDRNRERKRSRSKERDSDRHRYSGVSSDKKHRRIEDEMDQSSRSKHDSRKRKSEDRDSKQ EKNLKKRSIEEEHEEEEMILPQPPPSEEDSTKDEGVQKTNTGSEAKYSKKTSESDADAARRRYLERKLAKERARLAQQQ |
|