Gene
| Gene Model ID | pfu_aug2.0_75.1_16864 |
|---|---|
| Locus | scaffold75.1 : 334406 ... 338186 : + |
| To GenomeBrowser | scaffold75.1:334406..338186 |
| Genes list of scaffold | scaffold75.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_75.1_16864.t1 | 1 | 1 | zf-LITAF-like | 20 | 92 | 2.7e-23 | 81.5 | 1.5e-26 | 3.1e-23 | 81.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_75.1_16864.t1 | gi|675860926|ref|XP_009016023.1| | hypothetical protein HELRODRAFT_64675 [Helobdella robusta] | 2.0e-18 |
| pfu_aug2.0_75.1_16864.t1 | gi|597752130|ref|XP_007237930.1| | PREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [Astyanax mexicanus] | 3.0e-18 |
| pfu_aug2.0_75.1_16864.t1 | gi|301620244|ref|XP_002939491.1| | PREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [Xenopus (Silurana) tropicalis] | 5.0e-18 |
Transcript
| Transcript ID | pfu_aug2.0_75.1_16864.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_75.1_16864.t1 atgggaacgagaggagatgtaccaaagatagttgtagaatcacctaaagcagagttcaaggatactcctgttactaaaca atgtccagaatgtcggaataatatagtgaccacattacgatacaaaacaggacttttcacatacgcagtttgttttgtct tggcgtttaccgggtttttcctcggatgttgtttacttccgttttgtgctaaaagtactaaagacgtcattcacgagtgc tctatgtgtggatgtgaattaggagaatacaaaaggcttaaatga |
|
Protein
| Protein ID | pfu_aug2.0_75.1_16864.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_75.1_16864.t1 MGTRGDVPKIVVESPKAEFKDTPVTKQCPECRNNIVTTLRYKTGLFTYAVCFVLAFTGFFLGCCLLPFCAKSTKDVIHEC SMCGCELGEYKRLK |
|