Gene
Gene Model ID | pfu_aug2.0_753.1_11157 |
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Locus | scaffold753.1 : 10096 ... 40520 : + |
To GenomeBrowser | scaffold753.1:10096..40520 |
Genes list of scaffold | scaffold753.1 |
Synonym | pfu_aug1.0_11631.1_24932 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_753.1_11157.t1 | 1 | 1 | HLH | 160 | 214 | 1.2e-09 | 37.6 | 8.0e-13 | 3.0e-09 | 36.4 |
pfu_aug2.0_753.1_11157.t1 | 1 | 1 | Methyltransf_32 | 566 | 796 | 2.0e-21 | 76.1 | 1.7e-23 | 6.5e-20 | 71.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_753.1_11157.t1 | gi|524881741|ref|XP_005097520.1| | PREDICTED: protein RRNAD1-like [Aplysia californica] | 0.0 |
pfu_aug2.0_753.1_11157.t1 | gi|410928664|ref|XP_003977720.1| | PREDICTED: protein RRNAD1 [Takifugu rubripes] | 0.0 |
pfu_aug2.0_753.1_11157.t1 | gi|284009768|ref|NP_001164999.1| | uncharacterized protein LOC100327245 [Xenopus (Silurana) tropicalis] | 0.0 |
pfu_aug2.0_753.1_11157.t1 | gi|583993336|ref|XP_006791828.1| | PREDICTED: protein RRNAD1-like [Neolamprologus brichardi] | 0.0 |
pfu_aug2.0_753.1_11157.t1 | gi|113931362|ref|NP_001039128.1| | protein RRNAD1 [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_753.1_11157.t1 |
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Definition | - |
>pfu_aug2.0_753.1_11157.t1 atgatctgtgatcagaaaaatcttcaagaagttcaagaactttcttcaaatatagccaatcttctagaaatattgaaatg gattgttgatgcatacatatcggacttctttacacactcatactggaagaaactacctcagagtacaagggaatatctat ctgagctagaaccaccagaactgttgttcctactgaatgatgataaaccaaagaatgtaccccctctgttcttgcttgca ttccgttactgtacaaaaacattttccatgtcaagagaagtggtagatccaacatgtgataaggatgtctctcgtttatt gaaaacagataacaaagctattctaaacaatatctatcggtattttgcatattttgcaatcagtatggcagagattccaa gagaaagaaagtctttgggagataaattcttccgaagattctcaattagagagaagactaatggaattccactggtgaaa aagtcaagcaaacccctgacagagaagaggagaagagacagaattaacaaatgtctggtccaattaaagaacatcatatt cagagctagaggaaaagaggagaagaagtttgctcgtctggagaaggccgacattctagagatgaccataagtcatttga tggagatccatggtcaagcaacagatgcaaatttgactggggcagatgtaatgatgcagtacagccctgagagcattcct agtatacatggctgtatgaggagggtggaggcaatgagggacctgaaccctgcccaggaaatatccagggaggaggagcc tagtatctaccccaccccaggggacgtcctggccacgcccaggtactactgtgggaacagtcagaatcagacaatacagg atgttaactttggtcgtgaggacatgatagaggatgatggtataatgtgtgggtccgcctccagggtatttatgatgtgt ggtagccaaaatggtgcctcaccgatagaaggaaatagtattggtgatttatatacacagaggaagcaagacaaagtgtc actgataggaaattatcacaactatactccttcatacggcctccatgacaacagttgctatagtaaccatgccctagatg tcaggacctccaaaggacccaagttgacctctacccctcacagcagacctgtcagaagttctaccccaatcatgggcgtc agtgcttattgtatgaaagtaactcctccagatagtgactacctataccgaggtcaaggtcagcctaaaacatccacacc actccgatccagtgaccttttaaagcaacatgaaatgatgatggaacagaggtacaaagacagcagacagtatggaacaa gctttacatctccagaagacttactgtcttgcaagggtcaaggtcaacaagaacaaagtgctaccaaggttatgaacttt gacatttcccctgatcttcgtaccaggcttttctataactcttcatcatcatcagaggacagccatgatatacagagttc ttctaacaaaagttccaatgaacaccaaactttagcaaaggagttaccaggtcaactgtcaaatataagtaaccatgaca acaagggtcaaggtcactatcatccaaggtcaaatcacaaagaagatggacagtatttaccgtctaatcactgcctgagg aaacatgtcaaaccaaagaaacaacatgagataatgagacttggaaagacgctgcatcttctaggtacggccaccaagtg tccatttattgtggatgtaggtgcaggtcaaggtcacttgtcacggctgcttacttttgagcatggattcaaggtcacaa cagtagaggctgcaggatgtcatgcccctaaagcaaagaagtttgacagggatgctcaaaatcttataagaaagaagaag ctaaaatccagtacacaggaaaagaaagagtgtggagatccaagaagcacagacaatttacctgagcatgtgacctgttt tatccaatcagctacctccaaatctgaattcttagaaattgttcagcaatcgttttctaaatgtgaccatgacaaatctc attccgtccatcttagtgagaacacacaatctacctcgagtacctccaaacttaatactcagaaagttcaatgtgactct ggtaactctaaggctcaaaatacagacaaacaaactgattcaaggaacacctcaaaccctactaaaatacagatggatgg tagctcgtatgtacaaggaaaagagttcatactgacaggattacatgcatgtggagatttaacgacgaccatgctgaggg tgttctcgtcatgtcctgagattgtcggcatagcatctgtcgcatgctgttatatgaaactcacagacaaaagtacattg agtggtaaggattttggctatcccatgagtcagtacttactacgttcacacccagatcacagtctgagctatgaagccag ggaaatggcctgccacttcgttgacagctatacagagaggctacgagaaaacaagcagtcaagtctgaagcttcactgtt atagagccatgttacagtgtataattcatcatatagatccttcatttcaccatgggtctgttaaaatctctgtcaaaaat ggtgaaaatctcgactttatacagtatgctaaacaaggccttcaaagattgggaataaaaacacaggtccctgagtcgtt actagatgaagtacatagtaaacagtccatgtggaaagacgtagtagctttctacactctccgactcagtctagccccag tggtggagacgcttatactactagacagaatgctttacttatgggaaaatggtctttcaagtaccctagtgccaattttt gatccaaagatttcaccaaggaactttgctctacttgcttgtaagaagacctcaagctaa |
Protein
Protein ID | pfu_aug2.0_753.1_11157.t1 |
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Definition | - |
>pfu_aug2.0_753.1_11157.t1 MICDQKNLQEVQELSSNIANLLEILKWIVDAYISDFFTHSYWKKLPQSTREYLSELEPPELLFLLNDDKPKNVPPLFLLA FRYCTKTFSMSREVVDPTCDKDVSRLLKTDNKAILNNIYRYFAYFAISMAEIPRERKSLGDKFFRRFSIREKTNGIPLVK KSSKPLTEKRRRDRINKCLVQLKNIIFRARGKEEKKFARLEKADILEMTISHLMEIHGQATDANLTGADVMMQYSPESIP SIHGCMRRVEAMRDLNPAQEISREEEPSIYPTPGDVLATPRYYCGNSQNQTIQDVNFGREDMIEDDGIMCGSASRVFMMC GSQNGASPIEGNSIGDLYTQRKQDKVSLIGNYHNYTPSYGLHDNSCYSNHALDVRTSKGPKLTSTPHSRPVRSSTPIMGV SAYCMKVTPPDSDYLYRGQGQPKTSTPLRSSDLLKQHEMMMEQRYKDSRQYGTSFTSPEDLLSCKGQGQQEQSATKVMNF DISPDLRTRLFYNSSSSSEDSHDIQSSSNKSSNEHQTLAKELPGQLSNISNHDNKGQGHYHPRSNHKEDGQYLPSNHCLR KHVKPKKQHEIMRLGKTLHLLGTATKCPFIVDVGAGQGHLSRLLTFEHGFKVTTVEAAGCHAPKAKKFDRDAQNLIRKKK LKSSTQEKKECGDPRSTDNLPEHVTCFIQSATSKSEFLEIVQQSFSKCDHDKSHSVHLSENTQSTSSTSKLNTQKVQCDS GNSKAQNTDKQTDSRNTSNPTKIQMDGSSYVQGKEFILTGLHACGDLTTTMLRVFSSCPEIVGIASVACCYMKLTDKSTL SGKDFGYPMSQYLLRSHPDHSLSYEAREMACHFVDSYTERLRENKQSSLKLHCYRAMLQCIIHHIDPSFHHGSVKISVKN GENLDFIQYAKQGLQRLGIKTQVPESLLDEVHSKQSMWKDVVAFYTLRLSLAPVVETLILLDRMLYLWENGLSSTLVPIF DPKISPRNFALLACKKTSS |