Gene
| Gene Model ID | pfu_aug2.0_753.1_11162 |
|---|---|
| Locus | scaffold753.1 : 125995 ... 154955 : - |
| To GenomeBrowser | scaffold753.1:125995..154955 |
| Genes list of scaffold | scaffold753.1 |
| Synonym | pfu_aug1.0_506.1_58154 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cugbp elav-like family member 2 isoform x1 | GO:0006396 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_753.1_11162.t3 | 2 | 1 | RRM_1 | 24 | 88 | 2.8e-37 | 126.1 | 6.7e-22 | 2.5e-18 | 65.4 |
| pfu_aug2.0_753.1_11162.t3 | 2 | 1 | RRM_6 | 24 | 86 | 5.3e-27 | 93.6 | 1.8e-16 | 6.7e-13 | 48.4 |
| pfu_aug2.0_753.1_11162.t3 | 2 | 1 | RRM_5 | 40 | 86 | 5.7e-21 | 74.1 | 4.2e-12 | 1.6e-08 | 34.2 |
| pfu_aug2.0_753.1_11162.t3 | 2 | 2 | RRM_1 | 372 | 441 | 2.8e-37 | 126.1 | 1.1e-19 | 4.1e-16 | 58.3 |
| pfu_aug2.0_753.1_11162.t3 | 2 | 2 | RRM_6 | 372 | 442 | 5.3e-27 | 93.6 | 8.0e-15 | 3.0e-11 | 43.1 |
| pfu_aug2.0_753.1_11162.t3 | 2 | 2 | RRM_5 | 386 | 445 | 5.7e-21 | 74.1 | 3.1e-13 | 1.1e-09 | 37.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_753.1_11162.t3 | gi|688548264|ref|XP_009298631.1| | PREDICTED: CUGBP Elav-like family member 2 isoform X12 [Danio rerio] | 0.0 |
| pfu_aug2.0_753.1_11162.t3 | gi|688548257|ref|XP_009298630.1| | PREDICTED: CUGBP Elav-like family member 2 isoform X9 [Danio rerio] | 0.0 |
| pfu_aug2.0_753.1_11162.t3 | gi|578818239|ref|XP_006717436.1| | PREDICTED: CUGBP Elav-like family member 2 isoform X10 [Homo sapiens] | 0.0 |
| pfu_aug2.0_753.1_11162.t3 | gi|555971933|ref|XP_005897975.1| | PREDICTED: CUGBP Elav-like family member 2-like isoform X4 [Bos mutus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_753.1_11162.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_753.1_11162.t1 atgagcgggatgcatcatcccattcaaatgaaaccagcagatagtgaaaaaagaaatgaggagaggaagttatttgtagg aatgatctcaaagaaatgtacagaaagtgatatcaaaatgatgtttgctccatttggaaccatagaagattgtacgatat tacgtgaccaaaatggccaaagtagaggttgtgcatttgtaacatatgctaacagacagtccgctctcaatgcaataaaa aacatgcatcattcccaaacgatggagggatgttcctctccgttggtcgttaagtttgcagatacacagaaggaaaagga agcaaagaaattacaagcgttaaatcaaaatttgtggaatctatccacgacgggtgtaacgggtataaatccacagtatt tagctttattacaacaggcagctgtggctgggaacctaggaatgtttgccaatgcaggaaatcttggcctgatagcggcc cttgccgcgttacaatcaagcttacaatccaacaacagtggtaataactcgactccttgcacgacccctcctagtggaaa caatgtaccacatagtaacggaagcacgagtgcaggtgaagtgtcagccaacaatctacatttacagaatctgcaagggt tggcagctcttactagtgctaataacccgggtgctttaagtgctttaggtgtgcagaatattgcagcattaaatcagctc tcagggtcaactaattccactaatgcaacagctatggctaggggcactggtcacacaggttcaattaccgcaacctcccc cacaaattcattaagcggtttagcgggccttcagagtattggtaacaacaattttgcctcaagtgtttccccgggtttat caaatagcgtaaatggtctgggctcatcagcgccatctggtatggacgctctgagtcaggcctataccggaatccagcaa tatgcagcatcattccctaatgcatttagtagtcaggcagcccaacagctgcagcaggcacaagccaactcgccagcagg aaaacagacagaaggtccagatggagccaatttattcatttatcatctcccccaggaattcggtgaccatgaccttatga ccacttttcatccattcggaaacgtgatctccgctaaagtctttatagataaacaaactaatctcagcaagtgctttggc tttgtaagctatgacaatgccctctcagctcaagcagcaatccaggccatgaatggattccagataggaatgaagaggct taaagtacaactcaaacggccaaaaagcgacagcaagccttattga |
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| Transcript ID | pfu_aug2.0_753.1_11162.t2 |
| Definition | - |
>pfu_aug2.0_753.1_11162.t2 atgagcgggatgcatcatcccattcaaatgaaaccagcagatagtgaaaaaagaaatgaggagaggaagttatttgtagg aatgatctcaaagaaatgtacagaaagtgatatcaaaatgatgtttgctccatttggaaccatagaagattgtacgatat tacgtgaccaaaatggccaaagtagaggttgtgcatttgtaacatatgctaacagacagtccgctctcaatgcaataaaa aacatgcatcattcccaaacgatggagggatgttcctctccgttggtcgttaagtttgcagatacacagaaggaaaagga agcaaagaaattacaagcgttaaatcaaaatttgtggaatctatccacgacgggtgtaacgggtataaatccacagtatt tagctttattacaacaggcagctgtggctgggaacctaggaatgtttgccaatgcaggaaatcttggtgctaatcagtta gctgtacagcaattgctattggctgcggctgcagcagccgctggcaacaattcaggcctgatagcggcccttgccgcgtt acaatcaagcttacaatccaacaacagtggtaataactcgactccttgcacgacccctcctagtggaaacaatgtaccac atagtaacggaagcacgagtgcaggtgaagtgtcagccaacaatctacatttacagaatctgcaagggttggcagctctt actagtgctaataacccgggtgctttaagtgctttaggtgtgcagaatattgcagcattaaatcagctctcagggtcaac taattccactaatgcaacagctatggctaggggcactggtcacacaggttcaattaccgcaacctcccccacaaattcat taagcggtttagcgggccttcagagtattggtaacaacaattttgcctcaagtgtttccccgggtttatcaaatagcgta aatggtctgggctcatcagcgccatctggtatggacgctctgagtcaggcctataccggaatccagcaatatgcagcatc attccctaatgcatttagtagtcaggcagcccaacagctgcagcaggcacaagccaactcgccagcaggaaaacagacag aaggtccagatggagccaatttattcatttatcatctcccccaggaattcggtgaccatgaccttatgaccacttttcat ccattcggaaacgtgatctccgctaaagtctttatagataaacaaactaatctcagcaagtgctttggctttgtaagcta tgacaatgccctctcagctcaagcagcaatccaggccatgaatggattccagataggaatgaagaggcttaaagtacaac tcaaacggccaaaaagcgacagcaagccttattga |
|
| Transcript ID | pfu_aug2.0_753.1_11162.t3 |
| Definition | - |
>pfu_aug2.0_753.1_11162.t3 atgagcgggatgcatcatcccattcaaatgaaaccagcagatagtgaaaaaagaaatgaggagaggaagttatttgtagg aatgatctcaaagaaatgtacagaaagtgatatcaaaatgatgtttgctccatttggaaccatagaagattgtacgatat tacgtgaccaaaatggccaaagtagaggttgtgcatttgtaacatatgctaacagacagtccgctctcaatgcaataaaa aacatgcatcattcccaaacgatggagggatgttcctctccgttggtcgttaagtttgcagatacacagaaggaaaagga agcaaagaaattacaagcgttaaatcaaaatttgtggaatctatccacgacgggtgtaacgggtataaatccacagtatt tagctttattacaacaggcagctgtggctgggaacctaggaatgtttgccaatgcaggaaatcttggtgctaatcagtta gctgtacagcaattgctattggctgcggctgcagcagccgctggcaacaattcaggcctgatagcggcccttgccgcgtt acaatcaagcttacaatccaacaacagtggtaataactcgactccttgcacgacccctcctagtggaaacaatgtaccac atagtaacggaagcacgagtgcaggtgaagtgtcagccaacaatctacatttacagaatctgcaagggttggcagctctt actagtgctaataacccgggtgctttaagtgctttaggtgtgcagaatattgcagcattaaatcagctctcagggtcaac taattccactaatgcaacaggttcaattaccgcaacctcccccacaaattcattaagcggtttagcgggccttcagagta ttggtaacaacaattttgcctcaagtgtttccccgggtttatcaaatagcgtaaatggtctgggctcatcagcgccatct ggtatggacgctctgagtcaggcctataccggaatccagcaatatgcagcatcattccctaatgcatttagtagtcaggc agcccaacagctgcagcaggcacaagccaactcgccagcaggaaaacagacagaaggtccagatggagccaatttattca tttatcatctcccccaggaattcggtgaccatgaccttatgaccacttttcatccattcggaaacgtgatctccgctaaa gtctttatagataaacaaactaatctcagcaagtgctttggctttgtaagctatgacaatgccctctcagctcaagcagc aatccaggccatgaatggattccagataggaatgaagaggcttaaagtacaactcaaacggccaaaaagcgacagcaagc cttattga |
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Protein
| Protein ID | pfu_aug2.0_753.1_11162.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_753.1_11162.t1 MSGMHHPIQMKPADSEKRNEERKLFVGMISKKCTESDIKMMFAPFGTIEDCTILRDQNGQSRGCAFVTYANRQSALNAIK NMHHSQTMEGCSSPLVVKFADTQKEKEAKKLQALNQNLWNLSTTGVTGINPQYLALLQQAAVAGNLGMFANAGNLGLIAA LAALQSSLQSNNSGNNSTPCTTPPSGNNVPHSNGSTSAGEVSANNLHLQNLQGLAALTSANNPGALSALGVQNIAALNQL SGSTNSTNATAMARGTGHTGSITATSPTNSLSGLAGLQSIGNNNFASSVSPGLSNSVNGLGSSAPSGMDALSQAYTGIQQ YAASFPNAFSSQAAQQLQQAQANSPAGKQTEGPDGANLFIYHLPQEFGDHDLMTTFHPFGNVISAKVFIDKQTNLSKCFG FVSYDNALSAQAAIQAMNGFQIGMKRLKVQLKRPKSDSKPY |
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| Protein ID | pfu_aug2.0_753.1_11162.t2 |
| Definition | - |
>pfu_aug2.0_753.1_11162.t2 MSGMHHPIQMKPADSEKRNEERKLFVGMISKKCTESDIKMMFAPFGTIEDCTILRDQNGQSRGCAFVTYANRQSALNAIK NMHHSQTMEGCSSPLVVKFADTQKEKEAKKLQALNQNLWNLSTTGVTGINPQYLALLQQAAVAGNLGMFANAGNLGANQL AVQQLLLAAAAAAAGNNSGLIAALAALQSSLQSNNSGNNSTPCTTPPSGNNVPHSNGSTSAGEVSANNLHLQNLQGLAAL TSANNPGALSALGVQNIAALNQLSGSTNSTNATAMARGTGHTGSITATSPTNSLSGLAGLQSIGNNNFASSVSPGLSNSV NGLGSSAPSGMDALSQAYTGIQQYAASFPNAFSSQAAQQLQQAQANSPAGKQTEGPDGANLFIYHLPQEFGDHDLMTTFH PFGNVISAKVFIDKQTNLSKCFGFVSYDNALSAQAAIQAMNGFQIGMKRLKVQLKRPKSDSKPY |
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| Protein ID | pfu_aug2.0_753.1_11162.t3 |
| Definition | - |
>pfu_aug2.0_753.1_11162.t3 MSGMHHPIQMKPADSEKRNEERKLFVGMISKKCTESDIKMMFAPFGTIEDCTILRDQNGQSRGCAFVTYANRQSALNAIK NMHHSQTMEGCSSPLVVKFADTQKEKEAKKLQALNQNLWNLSTTGVTGINPQYLALLQQAAVAGNLGMFANAGNLGANQL AVQQLLLAAAAAAAGNNSGLIAALAALQSSLQSNNSGNNSTPCTTPPSGNNVPHSNGSTSAGEVSANNLHLQNLQGLAAL TSANNPGALSALGVQNIAALNQLSGSTNSTNATGSITATSPTNSLSGLAGLQSIGNNNFASSVSPGLSNSVNGLGSSAPS GMDALSQAYTGIQQYAASFPNAFSSQAAQQLQQAQANSPAGKQTEGPDGANLFIYHLPQEFGDHDLMTTFHPFGNVISAK VFIDKQTNLSKCFGFVSYDNALSAQAAIQAMNGFQIGMKRLKVQLKRPKSDSKPY |
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