Gene
| Gene Model ID | pfu_aug2.0_754.1_14537 |
|---|---|
| Locus | scaffold754.1 : 227729 ... 241119 : - |
| To GenomeBrowser | scaffold754.1:227729..241119 |
| Genes list of scaffold | scaffold754.1 |
| Synonym | pfu_aug1.0_9952.1_46129 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase chip | GO:0000209 GO:0004842 GO:0005634 GO:0005737 GO:0007165 GO:0016874 GO:0019899 GO:0031072 GO:0031398 GO:0035967 GO:0043161 GO:0065009 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_754.1_14537.t1 | 2 | 1 | TPR_11 | 3 | 67 | 4.3e-20 | 71.1 | 3.1e-20 | 2.5e-17 | 62.2 |
| pfu_aug2.0_754.1_14537.t1 | 3 | 1 | TPR_2 | 8 | 35 | 5.8e-15 | 53.9 | 3.3e-06 | 0.0027 | 17.5 |
| pfu_aug2.0_754.1_14537.t1 | 2 | 1 | TPR_16 | 9 | 67 | 8.2e-11 | 42.2 | 2.5e-09 | 2.1e-06 | 28.2 |
| pfu_aug2.0_754.1_14537.t1 | 2 | 1 | TPR_12 | 10 | 29 | 5.1e-09 | 35.9 | 0.062 | 51.0 | 3.8 |
| pfu_aug2.0_754.1_14537.t1 | 3 | 1 | TPR_14 | 11 | 41 | 6.1e-06 | 26.4 | 0.024 | 20.0 | 6.1 |
| pfu_aug2.0_754.1_14537.t1 | 3 | 1 | TPR_1 | 13 | 35 | 4.2e-16 | 57.7 | 0.00011 | 0.094 | 12.3 |
| pfu_aug2.0_754.1_14537.t1 | 2 | 1 | TPR_19 | 13 | 67 | 1.9e-07 | 31.3 | 1.5e-07 | 0.00013 | 22.2 |
| pfu_aug2.0_754.1_14537.t1 | 3 | 1 | TPR_7 | 15 | 37 | 3.1e-07 | 29.6 | 0.00023 | 0.19 | 11.5 |
| pfu_aug2.0_754.1_14537.t1 | 1 | 1 | Apc3 | 17 | 96 | 2.9e-10 | 40.1 | 5.4e-13 | 4.4e-10 | 39.5 |
| pfu_aug2.0_754.1_14537.t1 | 3 | 1 | TPR_8 | 18 | 30 | 6.1e-09 | 35.0 | 0.031 | 26.0 | 4.9 |
| pfu_aug2.0_754.1_14537.t1 | 2 | 1 | TPR_17 | 25 | 58 | 3.6e-07 | 29.8 | 7.0e-08 | 5.8e-05 | 22.9 |
| pfu_aug2.0_754.1_14537.t1 | 2 | 2 | TPR_12 | 34 | 96 | 5.1e-09 | 35.9 | 2.7e-09 | 2.2e-06 | 27.4 |
| pfu_aug2.0_754.1_14537.t1 | 3 | 2 | TPR_2 | 39 | 67 | 5.8e-15 | 53.9 | 1.4e-07 | 0.00011 | 21.7 |
| pfu_aug2.0_754.1_14537.t1 | 3 | 2 | TPR_1 | 40 | 68 | 4.2e-16 | 57.7 | 1.7e-10 | 1.4e-07 | 30.7 |
| pfu_aug2.0_754.1_14537.t1 | 3 | 2 | TPR_8 | 40 | 68 | 6.1e-09 | 35.0 | 3.2e-06 | 0.0026 | 17.4 |
| pfu_aug2.0_754.1_14537.t1 | 3 | 2 | TPR_7 | 42 | 68 | 3.1e-07 | 29.6 | 0.0088 | 7.3 | 6.6 |
| pfu_aug2.0_754.1_14537.t1 | 3 | 2 | TPR_14 | 42 | 67 | 6.1e-06 | 26.4 | 0.01 | 8.4 | 7.3 |
| pfu_aug2.0_754.1_14537.t1 | 2 | 2 | TPR_16 | 47 | 96 | 8.2e-11 | 42.2 | 2.3e-06 | 0.0019 | 18.8 |
| pfu_aug2.0_754.1_14537.t1 | 2 | 2 | TPR_17 | 60 | 92 | 3.6e-07 | 29.8 | 0.052 | 43.0 | 4.6 |
| pfu_aug2.0_754.1_14537.t1 | 3 | 3 | TPR_1 | 72 | 96 | 4.2e-16 | 57.7 | 0.00024 | 0.2 | 11.3 |
| pfu_aug2.0_754.1_14537.t1 | 3 | 3 | TPR_2 | 72 | 96 | 5.8e-15 | 53.9 | 0.00027 | 0.23 | 11.4 |
| pfu_aug2.0_754.1_14537.t1 | 3 | 3 | TPR_8 | 73 | 96 | 6.1e-09 | 35.0 | 0.00068 | 0.56 | 10.1 |
| pfu_aug2.0_754.1_14537.t1 | 2 | 2 | TPR_11 | 74 | 96 | 4.3e-20 | 71.1 | 0.0044 | 3.6 | 7.2 |
| pfu_aug2.0_754.1_14537.t1 | 3 | 3 | TPR_14 | 75 | 97 | 6.1e-06 | 26.4 | 0.0012 | 1.0 | 10.1 |
| pfu_aug2.0_754.1_14537.t1 | 3 | 3 | TPR_7 | 76 | 102 | 3.1e-07 | 29.6 | 0.0044 | 3.6 | 7.5 |
| pfu_aug2.0_754.1_14537.t1 | 2 | 2 | TPR_19 | 77 | 97 | 1.9e-07 | 31.3 | 0.0059 | 4.9 | 7.5 |
| pfu_aug2.0_754.1_14537.t1 | 1 | 1 | U-box | 118 | 189 | 1.1e-29 | 102.1 | 2.5e-32 | 2.1e-29 | 101.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_754.1_14537.t1 | gi|585706624|ref|XP_006823844.1| | PREDICTED: E3 ubiquitin-protein ligase CHIP-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_754.1_14537.t1 | gi|410895721|ref|XP_003961348.1| | PREDICTED: E3 ubiquitin-protein ligase CHIP [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_754.1_14537.t1 | gi|524907028|ref|XP_005108643.1| | PREDICTED: E3 ubiquitin-protein ligase CHIP-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_754.1_14537.t1 | gi|524907026|ref|XP_005108642.1| | PREDICTED: E3 ubiquitin-protein ligase CHIP-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_754.1_14537.t1 | gi|676479992|ref|XP_009061920.1| | hypothetical protein LOTGIDRAFT_127906 [Lottia gigantea] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_754.1_14537.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_754.1_14537.t1 atgagtgctactgatcttaaaagccaaggaaaccgtttatttgcatcaagaaaatacgatgcagcagcaaactgttacac aaaagccattatcaaaagtccaaacatccctacatactttacaaatcgtgcgttatgttacctgaagatgaagaactggg atcaggctcagcaggactgtagacgtgccctagatatggacagatcactggtcaaaggtcacttctttatgggacaggca ttaatagagcttggattacacgatgaggccattgcaagcttaaagagaggaaagatcaaacagctgaacgagttgttttc acaagtggatgaaaggagaaagcagagagatgtaccggactacctctgtgggaagataagcttcgagctgatgagagatc ctgtgattactccaagtggaataacttacgacaaaaaagatattgttgagcatttacaacgtgttggccattttgatccg gtgacgagaacagatctgactcaggatcaattaattcctaatttatcaatgaaggaagtagtagacaattatctagaaga aaatccatgggcggaagactactga |
|
Protein
| Protein ID | pfu_aug2.0_754.1_14537.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_754.1_14537.t1 MSATDLKSQGNRLFASRKYDAAANCYTKAIIKSPNIPTYFTNRALCYLKMKNWDQAQQDCRRALDMDRSLVKGHFFMGQA LIELGLHDEAIASLKRGKIKQLNELFSQVDERRKQRDVPDYLCGKISFELMRDPVITPSGITYDKKDIVEHLQRVGHFDP VTRTDLTQDQLIPNLSMKEVVDNYLEENPWAEDY |
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