Gene
| Gene Model ID | pfu_aug2.0_755.1_17800 |
|---|---|
| Locus | scaffold755.1 : 74346 ... 102000 : + |
| To GenomeBrowser | scaffold755.1:74346..102000 |
| Genes list of scaffold | scaffold755.1 |
| Synonym | pfu_aug1.0_63821.1_48985 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cugbp elav-like family member 4 | GO:0000166 GO:0000381 GO:0003729 GO:0005634 GO:0005737 GO:0006376 GO:0048025 GO:0048026 GO:0090394 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_755.1_17800.t2 | 1 | 1 | RRM_1 | 55 | 119 | 3.1e-15 | 55.5 | 8.7e-19 | 4.3e-15 | 55.0 |
| pfu_aug2.0_755.1_17800.t2 | 1 | 1 | RRM_6 | 55 | 115 | 2.5e-08 | 33.7 | 7.4e-12 | 3.7e-08 | 33.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_755.1_17800.t2 | gi|617407645|ref|XP_007554398.1| | PREDICTED: CUGBP Elav-like family member 4 [Poecilia formosa] | 0.0 |
| pfu_aug2.0_755.1_17800.t2 | gi|602648843|ref|XP_007430834.1| | PREDICTED: CUGBP Elav-like family member 4-like, partial [Python bivittatus] | 0.0 |
| pfu_aug2.0_755.1_17800.t2 | gi|583979080|ref|XP_006784875.1| | PREDICTED: CUGBP Elav-like family member 4-like [Neolamprologus brichardi] | 0.0 |
| pfu_aug2.0_755.1_17800.t2 | gi|551529609|ref|XP_005816267.1| | PREDICTED: CUGBP Elav-like family member 4-like, partial [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_755.1_17800.t2 | gi|226371665|ref|NP_001139767.1| | CUGBP Elav-like family member 4 isoform E [Mus musculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_755.1_17800.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_755.1_17800.t1 atgtcatttattaaaaagttactagagtctcaggacttgcgatgcttggatgaaatagtcgggagggtgtgcattcctaa cttactgtgcgcgagagagcgcattaaatgcgcagcaggcgctacacgaacagaagacgcttccagggatcccgtttctg ttgtcaccagtttttacacagattatgtttctgctgtcaaattgaaaagaagctgttag |
|
| Transcript ID | pfu_aug2.0_755.1_17800.t2 |
| Definition | - |
>pfu_aug2.0_755.1_17800.t2 atggcgactgtggtagcagggctagttactgatcatcatcatctcccccaccttatctccgcacatcctccctctacccc caatggaccgggcagtctcccccctgtcaggggactcggtgattccggtaacattcccgttaaggaccatgacgctgtca aactctttgtgggacaaattcctagaaatttggaagaaaaggatattagacctctttttgaggaatttggacaaatttac gagctcacagttcttaaggacaggtttacaggaatgcacaaagggtgtgcattcctaacttactgtgcgcgagagagcgc attaaatgcgcagcaggcgctacacgaacagaagacgcttccagggatcccgtttctgttgtcaccagtttttacacaga ttatgtttctgctgtcaaattga |
|
Protein
| Protein ID | pfu_aug2.0_755.1_17800.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_755.1_17800.t1 MSFIKKLLESQDLRCLDEIVGRVCIPNLLCARERIKCAAGATRTEDASRDPVSVVTSFYTDYVSAVKLKRSC |
|
| Protein ID | pfu_aug2.0_755.1_17800.t2 |
| Definition | - |
>pfu_aug2.0_755.1_17800.t2 MATVVAGLVTDHHHLPHLISAHPPSTPNGPGSLPPVRGLGDSGNIPVKDHDAVKLFVGQIPRNLEEKDIRPLFEEFGQIY ELTVLKDRFTGMHKGCAFLTYCARESALNAQQALHEQKTLPGIPFLLSPVFTQIMFLLSN |
|