Gene
| Gene Model ID | pfu_aug2.0_757.1_24374 |
|---|---|
| Locus | scaffold757.1 : 53382 ... 66815 : - |
| To GenomeBrowser | scaffold757.1:53382..66815 |
| Genes list of scaffold | scaffold757.1 |
| Synonym | pfu_aug1.0_2598.1_01169 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-dependent dna helicase pif1-like | GO:0000166 GO:0003678 GO:0006259 GO:0006974 GO:0043231 GO:0044710 GO:0044763 GO:0051276 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_757.1_24374.t1 | 1 | 1 | PIF1 | 201 | 508 | 0.0 | 232.8 | 0.0 | 0.0 | 225.7 |
| pfu_aug2.0_757.1_24374.t1 | 1 | 1 | AAA_30 | 201 | 410 | 1.2e-16 | 60.8 | 2.3e-19 | 2.0e-16 | 60.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_757.1_24374.t1 | gi|524885305|ref|XP_005099261.1| | PREDICTED: ATP-dependent DNA helicase PIF1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_757.1_24374.t1 | gi|38488735|ref|NP_942102.1| | ATP-dependent DNA helicase PIF1 [Danio rerio] | 0.0 |
| pfu_aug2.0_757.1_24374.t1 | gi|348501011|ref|XP_003438064.1| | PREDICTED: ATP-dependent DNA helicase PIF1-like isoform X1 [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_757.1_24374.t1 | gi|542204955|ref|XP_005476110.1| | PREDICTED: ATP-dependent DNA helicase PIF1-like isoform X2 [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_757.1_24374.t1 | gi|573894193|ref|XP_006634847.1| | PREDICTED: ATP-dependent DNA helicase PIF1-like [Lepisosteus oculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_757.1_24374.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_757.1_24374.t1 atggcagaaatcaattcacttgtctgtaccgttgctatggaggagctgtccatctctggaactgtactaaaaagatcggt acataggaacctcacactgaccattggaaggaatgaattcagagatgtcgtgctaaaggttgacttcagtaaaaaagata tgaagtttgaactgagggatttaacaatttttaagaaatttgccaaggagggtaaggcaacaatcagaattcctgacaaa aaattgaacttaatgatatctaactgtccacctgataaacttatcatatttttgaaaactttggacaccaaactgcagtg tttgaagttaaaaggatttgtgcctgaacggaagaagctgctttctggttgcccgagaacttttgatgaaataagcccac tgaccatcaaggatctacaaacagtgcacgaggcgagagcaaaaactctggagaagaatacagacatgttcacacctaaa ggaaagaggaaacgtatggaaagtgatggaaaggaaaacgagcccccaaaaggtgtgaagctagcaaagatgttgagttc tggtagtagtggaagcgagaagataattgctaacccaatccagctgagtaaggaacagtcagctgttttatctgccgtca ctagcggaaagagtatcttcttcacaggcagtgcaggcactggaaaatctttccttcttaagagaatcataggtaatgcc atcaatattgaattacctgtaacctgagcattaccaccccagcatacttatgccacggccagtacaggtgttgctgcatg tcatatagggggaacaacattacatgcttttgcaggtatagggtcaggatcagcttccttagagcagtgtgtacagttgg cgtccagaacgcaggtagcccagcagtggagaaagtgccgtcacctcatcattgacgaaatatccatggtagatggcgag ttctttgacaagctagaaactgttgccagggttgtgagaaaaagtgatgagccatttggagggatacagctgataatatg tggtgattttctacagcttccacctgttaccaaaggaaaggaaaagagaaagttctgcttccagtccaaagcttggctta agtgtatccagattaatatggaattgacagaggtcaggagacagaatgacagacgatttattgatatcttacaaagtatc aggaaaggaagatgtccagaggaaattcaagatgtcttaaaagaaacagtccggaacaatattcagaagaatggtatctt agcaacaaggttgtgtactcacaaagaagatgtagacaagatcaatgagtatcatcttggaaaacttacaggcatatcaa agacttttgtgtctacagacagtgatacatgttacaaacagcagctagatctgttgtcccctgtcccccacacactggaa ctgaaagtaggatctcaggtgatgttagcaaagaatctggatgtacagagaagtctagtgaatggtgccaggggtgtagt cataggatatgagaaaggaaatgaaggtcacccgcaggtcagatttgtctcaggtcaagttgagaccatcaaaccgacca ggtggatatttaagattggaggaggtgctatcatctcaaggaagcagatgcccctcaaactggcatgggctatatcaata cataaaagtcagggaatgactctggattgtgtagagatgtctttatcaaaggtatttgaagcaggacagacttatgtagc tttatccagagccaagagtctggaaggattacgtatattagactttgatcgcacctgtgtcagagctaactcggatgtgc tgcgattttaccatagactagaattaacaaggaaaatgctccaaacaaatgttgaagacttcttttga |
|
Protein
| Protein ID | pfu_aug2.0_757.1_24374.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_757.1_24374.t1 MAEINSLVCTVAMEELSISGTVLKRSVHRNLTLTIGRNEFRDVVLKVDFSKKDMKFELRDLTIFKKFAKEGKATIRIPDK KLNLMISNCPPDKLIIFLKTLDTKLQCLKLKGFVPERKKLLSGCPRTFDEISPLTIKDLQTVHEARAKTLEKNTDMFTPK GKRKRMESDGKENEPPKGVKLAKMLSSGSSGSEKIIANPIQLSKEQSAVLSAVTSGKSIFFTGSAGTGKSFLLKRIIGNA INIELPVTXALPPQHTYATASTGVAACHIGGTTLHAFAGIGSGSASLEQCVQLASRTQVAQQWRKCRHLIIDEISMVDGE FFDKLETVARVVRKSDEPFGGIQLIICGDFLQLPPVTKGKEKRKFCFQSKAWLKCIQINMELTEVRRQNDRRFIDILQSI RKGRCPEEIQDVLKETVRNNIQKNGILATRLCTHKEDVDKINEYHLGKLTGISKTFVSTDSDTCYKQQLDLLSPVPHTLE LKVGSQVMLAKNLDVQRSLVNGARGVVIGYEKGNEGHPQVRFVSGQVETIKPTRWIFKIGGGAIISRKQMPLKLAWAISI HKSQGMTLDCVEMSLSKVFEAGQTYVALSRAKSLEGLRILDFDRTCVRANSDVLRFYHRLELTRKMLQTNVEDFF |
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