Gene
| Gene Model ID | pfu_aug2.0_757.1_24376 |
|---|---|
| Locus | scaffold757.1 : 88072 ... 90945 : - |
| To GenomeBrowser | scaffold757.1:88072..90945 |
| Genes list of scaffold | scaffold757.1 |
| Synonym | pfu_aug1.0_72980.1_27690 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| trimeric intracellular cation channel type a-like | GO:0005261 GO:0015672 GO:0016020 GO:0098655 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_757.1_24376.t1 | 1 | 1 | TRIC | 1 | 70 | 2.4e-16 | 59.7 | 4.1e-20 | 3.0e-16 | 59.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_757.1_24376.t1 | gi|676424489|ref|XP_009044243.1| | hypothetical protein LOTGIDRAFT_103317 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_757.1_24376.t1 | gi|524891961|ref|XP_005102512.1| | PREDICTED: trimeric intracellular cation channel type A-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_757.1_24376.t1 | gi|170596270|ref|XP_001902704.1| | GH25683p [Brugia malayi] | 1.00053e-42 |
| pfu_aug2.0_757.1_24376.t1 | gi|241997874|ref|XP_002433580.1| | trimeric intracellular cation channel type A, putative [Ixodes scapularis] | 4.00001e-41 |
| pfu_aug2.0_757.1_24376.t1 | gi|312078001|ref|XP_003141548.1| | hypothetical protein LOAG_05964 [Loa loa] | 7.00005e-41 |
Transcript
| Transcript ID | pfu_aug2.0_757.1_24376.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_757.1_24376.t1 atgaagaatttagaacgtttggtcaggggtttgtggatcccaggttctaatgaaatgcttcaaccaacatttgtaacgaa ggcgtgctttttggctgcccttgtgttcctgtcagagaggataggttacattacggccccacatcccctggtttatttcg gagtagtaatcttcttcatatacttcaagttatctgccctgcttcttggcattcatgatccttttgcgccatttgagaac ttgttctgtgccatctttatgggaggaatgtgggatgccatgaaaagagcggtagtgtcggaaggaaagacggaggaaga aaaggaaaaaatcaacgacattcccgtcaaaagcaaggaagataagaaaaaagattag |
|
Protein
| Protein ID | pfu_aug2.0_757.1_24376.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_757.1_24376.t1 MKNLERLVRGLWIPGSNEMLQPTFVTKACFLAALVFLSERIGYITAPHPLVYFGVVIFFIYFKLSALLLGIHDPFAPFEN LFCAIFMGGMWDAMKRAVVSEGKTEEEKEKINDIPVKSKEDKKKD |
|