Gene
| Gene Model ID | pfu_aug2.0_767.1_24385 |
|---|---|
| Locus | scaffold767.1 : 54157 ... 75495 : - |
| To GenomeBrowser | scaffold767.1:54157..75495 |
| Genes list of scaffold | scaffold767.1 |
| Synonym | pfu_aug1.0_8742.1_60488 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_767.1_24385.t1 | 1 | 1 | DUF3534 | 3 | 44 | 7.2e-10 | 38.9 | 3.4e-13 | 1.7e-09 | 37.7 |
| pfu_aug2.0_767.1_24385.t1 | 3 | 1 | PDZ | 142 | 219 | 4.80001e-41 | 138.8 | 6.2e-15 | 3.1e-11 | 43.2 |
| pfu_aug2.0_767.1_24385.t1 | 3 | 1 | PDZ_2 | 146 | 218 | 9.3e-16 | 57.4 | 4.7e-06 | 0.023 | 14.5 |
| pfu_aug2.0_767.1_24385.t1 | 3 | 2 | PDZ | 356 | 437 | 4.80001e-41 | 138.8 | 6.3e-18 | 3.1e-14 | 52.8 |
| pfu_aug2.0_767.1_24385.t1 | 3 | 2 | PDZ_2 | 363 | 441 | 9.3e-16 | 57.4 | 5.4e-11 | 2.7e-07 | 30.3 |
| pfu_aug2.0_767.1_24385.t1 | 3 | 3 | PDZ | 493 | 564 | 4.80001e-41 | 138.8 | 1.0e-15 | 5.1e-12 | 45.7 |
| pfu_aug2.0_767.1_24385.t1 | 3 | 3 | PDZ_2 | 497 | 552 | 9.3e-16 | 57.4 | 3.9e-06 | 0.019 | 14.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_767.1_24385.t1 | gi|676488849|ref|XP_009064748.1| | hypothetical protein LOTGIDRAFT_132029, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_767.1_24385.t1 | gi|556973915|ref|XP_005994891.1| | PREDICTED: partitioning defective 3 homolog isoform X11 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_767.1_24385.t1 | gi|556973905|ref|XP_005994888.1| | PREDICTED: partitioning defective 3 homolog isoform X8 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_767.1_24385.t1 | gi|556973890|ref|XP_005994883.1| | PREDICTED: partitioning defective 3 homolog isoform X3 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_767.1_24385.t1 | gi|556973884|ref|XP_005994881.1| | PREDICTED: partitioning defective 3 homolog isoform X1 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_767.1_24385.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_767.1_24385.t1 atgcctatgaaggttaccgtatgctttgatagagtccgtattatcgtcccttgtggggacggggaaattcttgtcagaca actcatagaaaaggctgtagtacgatacaaaaaggcaactggaaagcttcatgatcagtcagactctgaggaccatgagg ttgccaaggagatggacggaggtggggaccgtaccaaaggtagctttagtcgattctccagagattcttggagacagtcc ctgggtaacagaccagacatgtacaaatggctggaggctcaggaacgacagcatgataaaatacaacagatggagcgtac agagccagtgggaggagcaagtattgagcatacctctacaaaaccccaacatcccctcgaaccaagacccacgcaaggga gtatactaatcaacctaccaaacgatggaggaccactcggcatccatgttgtaccggattatagtgaaaatggcagggag atgggcctgcttgtacagggtgtggaggatggagggagagtggcaaaggatggcagactgagagaaaatgacaggattat agaaataaacggccaaactctagtagatgtgtcgttttccagagcacaggacattttccggtcagccatgaagagggatg agatcaaactacggatcataaagaagcaggtgccccctctgcccaagcagcctccccctccagtaatgcccaagcccaga gggcacataccactcaagccatcacccctgaccttacctttacatggactagtccattctgactcgctctcccctactgg acctgatggaacgagcacaccagctcaaaatagcagcagcagcagtttagagggaacagttgtcaagtcacctatcctcc ctaacaaactggctccacccgcagtccctccctctcccactaaacgtgtccctcctgctgtccccatgcggcaccccacc acctcactaaccactgacaaaggggagaactctggtaccacaaccggacagcagaaacttgtggctccaaccaacacgaa gaaaattggaaagaaaatagacatagtgctgacaaaaggtcctgtaggacttggatttagtgttacaaccagagacaatc cggcaggaggggattccccaatctatattaagaatatcctacctagaggagctgccatcacagatggtagactgagggcc ggagacagacttttggaggtgaatggagaggacctgagcggtaaaacacagtcagatgtagtgggcatgctcagaaatat gtcgatgggcagtatggtcaagttggtcatctcacggcaggaggcagtggacacaaggttccaggtccccagggcaatga aggaaaatgtctcaccaaacactgtcttacagcctgccgagaaatcaggagatgatggcacgctggccaacatgaaaaac aaggacatcatctcgctggacattcctctgaacgactcggggtcggcaggactaggggtcagtgtgaagggtaaaacctt gactactgaccaggtgaccaaggatcttggtatttttgtcaagtctgtgatacatggaggtgctgcctccaaggatggta gactggtgatcaatgaccaactaatagaggttaacggagaagtcttaccgggtctgtctaataccgacgccatggaaacg ctgcggaaagccatgcagacagatggtccaattccaggatatatccaccttgttatagcaaggaaaatcggggcaccttc tccatccccttttcaacaaggggagacaactggggatcagtttactttcagtgctaacggagattccaaatttcttaatg atagtgatgggaaagagttatttttaggtgctgaacatttgagtgcatcttacaattctaagaatagttcaaataatcgt gacgagggtgagaaaagtgagcctgcacctccccctcgaggtcagcttcataaacattttgaggacacagatggaggaaa ggccggatgtttttaa |
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Protein
| Protein ID | pfu_aug2.0_767.1_24385.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_767.1_24385.t1 MPMKVTVCFDRVRIIVPCGDGEILVRQLIEKAVVRYKKATGKLHDQSDSEDHEVAKEMDGGGDRTKGSFSRFSRDSWRQS LGNRPDMYKWLEAQERQHDKIQQMERTEPVGGASIEHTSTKPQHPLEPRPTQGSILINLPNDGGPLGIHVVPDYSENGRE MGLLVQGVEDGGRVAKDGRLRENDRIIEINGQTLVDVSFSRAQDIFRSAMKRDEIKLRIIKKQVPPLPKQPPPPVMPKPR GHIPLKPSPLTLPLHGLVHSDSLSPTGPDGTSTPAQNSSSSSLEGTVVKSPILPNKLAPPAVPPSPTKRVPPAVPMRHPT TSLTTDKGENSGTTTGQQKLVAPTNTKKIGKKIDIVLTKGPVGLGFSVTTRDNPAGGDSPIYIKNILPRGAAITDGRLRA GDRLLEVNGEDLSGKTQSDVVGMLRNMSMGSMVKLVISRQEAVDTRFQVPRAMKENVSPNTVLQPAEKSGDDGTLANMKN KDIISLDIPLNDSGSAGLGVSVKGKTLTTDQVTKDLGIFVKSVIHGGAASKDGRLVINDQLIEVNGEVLPGLSNTDAMET LRKAMQTDGPIPGYIHLVIARKIGAPSPSPFQQGETTGDQFTFSANGDSKFLNDSDGKELFLGAEHLSASYNSKNSSNNR DEGEKSEPAPPPRGQLHKHFEDTDGGKAGCF |
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