Gene
| Gene Model ID | pfu_aug2.0_77.1_23388 |
|---|---|
| Locus | scaffold77.1 : 194444 ... 200672 : - |
| To GenomeBrowser | scaffold77.1:194444..200672 |
| Genes list of scaffold | scaffold77.1 |
| Synonym | pfu_aug1.0_1262.1_29645 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mediator of rna polymerase ii transcription subunit 28 | GO:0005856 GO:0044446 GO:0045596 GO:0048856 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_77.1_23388.t1 | 1 | 1 | Med28 | 39 | 115 | 7.9e-19 | 67.8 | 7.6e-23 | 1.1e-18 | 67.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_77.1_23388.t1 | gi|524881781|ref|XP_005097540.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 28-like [Aplysia californica] | 9.99967e-42 |
| pfu_aug2.0_77.1_23388.t1 | gi|573882103|ref|XP_006629238.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 28-like [Lepisosteus oculatus] | 9.0e-32 |
| pfu_aug2.0_77.1_23388.t1 | gi|507618300|ref|XP_004624602.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Octodon degus] | 2.0e-31 |
| pfu_aug2.0_77.1_23388.t1 | gi|658831031|ref|XP_008400706.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Poecilia reticulata] | 2.0e-31 |
| pfu_aug2.0_77.1_23388.t1 | gi|348558561|ref|XP_003465086.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cavia porcellus] | 2.0e-31 |
Transcript
| Transcript ID | pfu_aug2.0_77.1_23388.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_77.1_23388.t1 atgatggcttcaaatgggtctggaacacacttggtggatgacttagaagcagcctttcagaattgtctatcagggctgac atcccaagaacattttaatgtacaggatgtggacgaaatcaaagctggtacagatcagacagtgttaaagttcctagaga ttgccagacaaacggaggtgttgttccttcacaaacgactcatactgtcaaaacaaaaacccgagcagcttatgaaagat gaaacagatgaccttcgagctgagctggagaggaaagatctacttataaaaagacatcaagagaaacttcagcaatggca agctaaactgaagcaggtgaataataaaggtccgatatctaccacggctccaagcacatcacagctcgttacccagaatc ctctaccgatgggtccaccacatcagcagcagcaacacccggtacaacacggccctgtgggatatggaggcatgatgaga gggcagtcacagatgaacataccggatacagggcaagggcagggcataaacattggcccggggccaggtttccatcagca gtcacaaatggcccaatcacagccttcccacatgatgctacagagacagggctcagggcagggaccggggccaggtcatc agcttggcccccatcaacctcctcctgcatatccacagggccctctacagtttttggaacaaactatgtcaagtatcggc atgcctgagagaagatag |
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Protein
| Protein ID | pfu_aug2.0_77.1_23388.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_77.1_23388.t1 MMASNGSGTHLVDDLEAAFQNCLSGLTSQEHFNVQDVDEIKAGTDQTVLKFLEIARQTEVLFLHKRLILSKQKPEQLMKD ETDDLRAELERKDLLIKRHQEKLQQWQAKLKQVNNKGPISTTAPSTSQLVTQNPLPMGPPHQQQQHPVQHGPVGYGGMMR GQSQMNIPDTGQGQGINIGPGPGFHQQSQMAQSQPSHMMLQRQGSGQGPGPGHQLGPHQPPPAYPQGPLQFLEQTMSSIG MPERR |
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