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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_77.1_23390
Locus scaffold77.1 : 206773 ... 256349 : +
To GenomeBrowser scaffold77.1:206773..256349
Genes list of scaffold scaffold77.1
Synonym pfu_aug1.0_2004.1_29939

Manual annotation
Annotation by Blast2GO
Annotation GO
ubiquitin-conjugating enzyme e2-17 kda GO:0000209 GO:0002119 GO:0005524 GO:0005875 GO:0006915 GO:0007067 GO:0007140 GO:0007286 GO:0008054 GO:0009792 GO:0016322 GO:0016477 GO:0016881 GO:0030718 GO:0031625 GO:0031647 GO:0040035 GO:0042787 GO:0045676 GO:0048132 GO:0051276 GO:0061630 GO:0061631

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_77.1_23390.t1 2 1 UQ_con 5 141 0.0 344.1 0.0 0.0 170.9
pfu_aug2.0_77.1_23390.t1 2 1 Prok-E2_B 46 117 1.9e-09 37.3 7.3e-07 0.0018 18.0
pfu_aug2.0_77.1_23390.t1 2 1 RWD 50 97 5.9e-08 32.6 9.6e-06 0.024 14.5
pfu_aug2.0_77.1_23390.t1 2 2 UQ_con 174 306 0.0 344.1 0.0 0.0 171.4
pfu_aug2.0_77.1_23390.t1 2 2 Prok-E2_B 215 282 1.9e-09 37.3 1.2e-06 0.003 17.3
pfu_aug2.0_77.1_23390.t1 2 2 RWD 218 279 5.9e-08 32.6 1.5e-06 0.0036 17.1

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_77.1_23390.t1 gi|24646906|ref|NP_731941.1| effete, isoform A [Drosophila melanogaster] 0.0
pfu_aug2.0_77.1_23390.t1 gi|383856822|ref|XP_003703906.1| PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa isoform X2 [Megachile rotundata] 0.0
pfu_aug2.0_77.1_23390.t1 gi|665785772|ref|XP_008549001.1| PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Microplitis demolitor] 0.0
pfu_aug2.0_77.1_23390.t1 gi|156391789|ref|XP_001635732.1| predicted protein [Nematostella vectensis] 0.0
pfu_aug2.0_77.1_23390.t1 gi|512919741|ref|XP_004929459.1| PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Bombyx mori] 0.0

Transcript
Transcript IDpfu_aug2.0_77.1_23390.t1
Definition-
>pfu_aug2.0_77.1_23390.t1
atggcactaaagcgaataaataaggaactacaagacctgggcagagatcccccagcacagtgctctgcagggcctgtagg
tgatgatttgttccactggcaagcaaccataatgggtccaccggacagtccctttcagggtggtgtatttttcctcacaa
tacattttccaacagattaccctttcaagccacctaaggttgctttcacaacaagaatataccatcccaacataaacagt
aacggcagtatttgtctggatattctacgttcacaatggtctccagctttaacgatttcaaaagttctcctttcaatatg
ctccatgctgacagatccaaatccggatgatcctttggttccagaaattgcacgaatatacaaaactgataggtcaaaat
acttagaacaggcgaaagaatggacaaagaagaattgttttcagccaatagtggaaactccaataggaaccaattgtgct
ccacttcttgctgattaccaacaaattatggctctaaaaagaataaataaggaattacaagacttgggcagggacccacc
agcacaatgctcagcagggccagtaggggacgatttatttcattggcaagcaacaataatgggtccacatgatagtccat
atcagggtggtgtatttttcctctcaatacatttccctacggattaccctttcaagcctcccaagatagccttcacaaca
agaatataccatcctaacataaacagtaacggcagtatttgtctggatattctacgttcacaatggtctccagctttaac
gatttcaaaagttcttttatccatctgttccttgctgagtgatccaaatccagacgacccacttgtaccggagatcgctc
gtgtttacaagacagatagacgaaaatacaatgaaactggagtagactggactaggaaatatgccatgtga

Protein
Protein IDpfu_aug2.0_77.1_23390.t1
Definition-
>pfu_aug2.0_77.1_23390.t1
MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPFQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS
NGSICLDILRSQWSPALTISKVLLSICSMLTDPNPDDPLVPEIARIYKTDRSKYLEQAKEWTKKNCFQPIVETPIGTNCA
PLLADYQQIMALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPHDSPYQGGVFFLSIHFPTDYPFKPPKIAFTT
RIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLSDPNPDDPLVPEIARVYKTDRRKYNETGVDWTRKYAM

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