Gene
| Gene Model ID | pfu_aug2.0_77.1_23394 |
|---|---|
| Locus | scaffold77.1 : 384145 ... 413409 : - |
| To GenomeBrowser | scaffold77.1:384145..413409 |
| Genes list of scaffold | scaffold77.1 |
| Synonym | pfu_aug1.0_34341.1_26682 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_77.1_23394.t1 | 2 | 1 | Ldl_recept_a | 54 | 59 | 1.8e-12 | 46.8 | 2.1 | 7800.0 | -3.2 |
| pfu_aug2.0_77.1_23394.t1 | 1 | 1 | Lectin_C | 75 | 195 | 3.8e-10 | 40.3 | 2.2e-13 | 8.1e-10 | 39.2 |
| pfu_aug2.0_77.1_23394.t1 | 2 | 2 | Ldl_recept_a | 198 | 234 | 1.8e-12 | 46.8 | 5.0e-16 | 1.8e-12 | 46.8 |
| pfu_aug2.0_77.1_23394.t1 | 1 | 1 | CUB | 238 | 343 | 3.4e-21 | 75.3 | 1.9e-24 | 6.9e-21 | 74.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_77.1_23394.t1 | gi|312080084|ref|XP_003142450.1| | hypothetical protein LOAG_06866 [Loa loa] | 2.99878e-43 |
| pfu_aug2.0_77.1_23394.t1 | gi|585715458|ref|XP_006825339.1| | PREDICTED: uncharacterized protein LOC100378937, partial [Saccoglossus kowalevskii] | 3.0e-37 |
| pfu_aug2.0_77.1_23394.t1 | gi|557774238|ref|XP_005186769.1| | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 isoform X2 [Musca domestica] | 2.0e-33 |
Transcript
| Transcript ID | pfu_aug2.0_77.1_23394.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_77.1_23394.t1 atggacagtaacgtccagctaatgtccagtcgcagatcatttcttcttaccgtgcttctctggtcaattggacttctcat tttcttggataggttttcacagagtcaggagcttgagtatcagtttgatttgccattttatgaaacacagtctgtattgt ttacttgtgataatggctggcataaagtagggggcagttgtctgttggtcgtcacagaattgaccacttttgaccaagca caagcctattgcaggagtaatggggcatcgttgttaaaagtgagcggtctatttgaaaatagaatatttggagaatttct tcatgagaaaattctcagttcaaatgatttatcggatctcaacttcatctggattgggttatccaggactgcagcagggg actatgagtggggagatggggaggtagcacaggcttatcagggcttctgggccctgagtcaaccaaaagtctttcatata ggttttagaacttgtagttatttaggagtgaataatgtcacagatatcggcatttaccgttgggcactcggggattgcca acaacggttgccgttcgtgtgccaagcctcttcatgtgccaaatctcagttccgttgtaaggacggtagtgcgtgtatta atgccaagtggcattgtgatggaaccccggactgcgctgaccagtcggacgaacaggactgtaatggtacatgtggagga atatatcagggactcaatggaacattccattcaccatataatgatagtcgctcatacccatcatactcatcatgtcattg gaaaatctcatcacccataggcaccagaatacagttaaattttgagacgtttgatttggaggcaccgtacgacaaagtca cagtttatgacggggcactggaggcggatccgctggtcggagtcttcaccggaaacaacacccctaccgtacccttgtcc tcaactaactttcttctagtcatttttgaatctgatcaaaatattgcagggagaggattcgatgcctcttggaaagcaac aacaatcgcttcatgttcctgtgggctcgggaacaagaaatatgaagttaatctgtgtatatggaagaattag |
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Protein
| Protein ID | pfu_aug2.0_77.1_23394.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_77.1_23394.t1 MDSNVQLMSSRRSFLLTVLLWSIGLLIFLDRFSQSQELEYQFDLPFYETQSVLFTCDNGWHKVGGSCLLVVTELTTFDQA QAYCRSNGASLLKVSGLFENRIFGEFLHEKILSSNDLSDLNFIWIGLSRTAAGDYEWGDGEVAQAYQGFWALSQPKVFHI GFRTCSYLGVNNVTDIGIYRWALGDCQQRLPFVCQASSCAKSQFRCKDGSACINAKWHCDGTPDCADQSDEQDCNGTCGG IYQGLNGTFHSPYNDSRSYPSYSSCHWKISSPIGTRIQLNFETFDLEAPYDKVTVYDGALEADPLVGVFTGNNTPTVPLS STNFLLVIFESDQNIAGRGFDASWKATTIASCSCGLGNKKYEVNLCIWKN |
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