Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_77.1_23402
Locus scaffold77.1 : 496720 ... 502778 : +
To GenomeBrowser scaffold77.1:496720..502778
Genes list of scaffold scaffold77.1
Synonym pfu_aug1.0_5941.1_02108

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_77.1_23402.t1 1 1 zf-RING_2 15 59 4.1e-08 32.9 3.4e-11 4.1e-08 32.9
pfu_aug2.0_77.1_23402.t1 2 1 zf-C3HC4_3 15 60 8.7e-06 25.3 7.0e-09 8.7e-06 25.3
pfu_aug2.0_77.1_23402.t1 3 1 zf-C3HC4 16 58 6.1e-09 35.4 4.9e-12 6.1e-09 35.4
pfu_aug2.0_77.1_23402.t1 2 1 zf-C3HC4_2 16 58 2.0e-08 34.1 1.6e-11 2.0e-08 34.1
pfu_aug2.0_77.1_23402.t1 2 1 zf-C3HC4_4 16 58 1.3e-07 31.4 1.0e-10 1.3e-07 31.4
pfu_aug2.0_77.1_23402.t1 3 1 zf-RING_UBOX 16 56 4.3e-07 29.5 3.5e-10 4.3e-07 29.5
pfu_aug2.0_77.1_23402.t1 4 1 zf-B_box 30 43 2.2e-10 40.2 0.27 340.0 1.2
pfu_aug2.0_77.1_23402.t1 4 2 zf-B_box 54 60 2.2e-10 40.2 3.9 4800.0 -2.5
pfu_aug2.0_77.1_23402.t1 3 2 zf-RING_UBOX 55 63 4.3e-07 29.5 0.22 280.0 1.3
pfu_aug2.0_77.1_23402.t1 2 2 zf-C3HC4_3 94 128 8.7e-06 25.3 0.082 100.0 2.6
pfu_aug2.0_77.1_23402.t1 4 3 zf-B_box 95 139 2.2e-10 40.2 3.4e-05 0.042 13.7
pfu_aug2.0_77.1_23402.t1 3 2 zf-C3HC4 97 129 6.1e-09 35.4 1.1 1400.0 -1.0
pfu_aug2.0_77.1_23402.t1 2 2 zf-C3HC4_2 112 129 2.0e-08 34.1 0.045 56.0 3.8
pfu_aug2.0_77.1_23402.t1 3 3 zf-RING_UBOX 113 127 4.3e-07 29.5 2.5 3100.0 -2.1
pfu_aug2.0_77.1_23402.t1 2 2 zf-C3HC4_4 114 126 1.3e-07 31.4 0.27 330.0 1.2
pfu_aug2.0_77.1_23402.t1 4 4 zf-B_box 157 197 2.2e-10 40.2 3.3e-13 4.0e-10 39.4
pfu_aug2.0_77.1_23402.t1 3 3 zf-C3HC4 176 184 6.1e-09 35.4 8.8 11000.0 -3.9
pfu_aug2.0_77.1_23402.t1 4 1 NHL 181 196 2.3e-07 30.3 4.8 5900.0 -2.5
pfu_aug2.0_77.1_23402.t1 4 2 NHL 448 470 2.3e-07 30.3 0.0054 6.7 6.8
pfu_aug2.0_77.1_23402.t1 4 3 NHL 611 635 2.3e-07 30.3 5.7e-07 0.0007 19.4
pfu_aug2.0_77.1_23402.t1 4 4 NHL 654 667 2.3e-07 30.3 3.5 4300.0 -2.0

Transcript
Transcript IDpfu_aug2.0_77.1_23402.t1
Definition-
>pfu_aug2.0_77.1_23402.t1
atggcggaagcaccgctatcaactctaagtaatgattttctcacatgtaccatttgtttggaaattttcaaggaaccaaa
gattttatcctgtttgcactctttctgcatgaactgtttagaaaaacatttagaaaagtctaaaacaagtaacagcatcg
catgtccactctgtcgtgaaatgacaattataagtaaagatgggattcagggactgaaaaataactttttcatgacgaat
ctcatagacttcagtgaatcaacatcagctcagatcacaaacaaaaactgctcattctgtgcgctgatgaagaaaaggat
tcctgcacttggcaagtgtctgacatgcggagacttcctttgccccgagtgttaccaacgacataagtttacaacaaaga
ccttccaacatgaaactgcaacacttgaagaattgcaaagcggaaaatacaatgaaaaaataaggctgaatcaagaaatt
ccgtgcgatgaacataaaaatactcttcggtatttttgtgatacatgcaatgtcccagtatgtccagactgtgtcatcct
cgaccacaaagaaggacatttcatagtcaagccatcagaagcaataaagaaaaggcagcaagaaattggcagtttgctgg
agggtttagacaagaaaatgactgatttcaaacaaaacagctcccttctagaagaagaggaacggaaggtcgataccact
caacgcgatatgtcgcaacttattcgagaaacaatcgacaatctggtgaagaaaatttcggcagaaggtcaaaaggcaca
agaaatattacaaacacacatcaacgttagaagacagacattgacgagagtaagatcagagcaagagaaaaatattgcac
ttctgcaaagctctctggtgttttgtcaacgagtgataagtaatggaatggaaggggaaatagtgttccttcaggagatg
atgcgtaaaagactctctttcctggaagccgaagtctttgacaaaaatgaaataaagccatggacaccacctacattaaa
tataaaaacattatcagaaaatccgtcttctttagaaattttcaagttcagagaaacatcccttcctatgagaccagaac
acatgacggataattgcatggcagctgatcgaattccgaacacagctaaatcaatccctaaatcattaaccatttcatgt
ccaaatctagcagaggctatcgccaatgaagaaaagaatacgagaggaacgaacggacaggcaggctgtcctttacagct
tcatcaaaaacgcatcattgattgcactgctgctgacgatgaatatgagtcaaagataacttctgtagactggtgcgatg
atcattcctttattgttgctgatgaagacaacgaaaaggtaaagaaatacagcataagaggcaaacttttacaatcctgt
aaagttaaaaacgtacaaacagttgcttgcttgcgtaatatggtattttgtggactaactggcgggaaaattacattaat
caaagcaaactccatatttctcaacattgaaactcagaagtatggtatctgtgttccagtggtcataggaaatgcgacat
taaatgcattatttgttagcaataccagtttgcaacacatggatgagatgggaaatgtttccaagtcaattcctttcgcg
gacaaaaccggtaagcgtgtcagaatgaaaccagtatatccacatcgttttcgggacaaagaaattgtcatttctgattg
gtccactacttcttcatacataatcagggaaaacggtttaacaacgcgtatcaaaatgaacagtaacaaatctccaagtg
gtttggcttgtgacaatgaaaataacatatacgtcgctgactactggaagaatgaaataatggtcttaaattcagaatgt
gtacacatcaagacattcaaaataccaaatgtaccaactccaaagggcatggcttgctctaaaagcaactccctacttgt
atcatttagagatggagttgcgctgtttcaaatttcataa

Protein
Protein IDpfu_aug2.0_77.1_23402.t1
Definition-
>pfu_aug2.0_77.1_23402.t1
MAEAPLSTLSNDFLTCTICLEIFKEPKILSCLHSFCMNCLEKHLEKSKTSNSIACPLCREMTIISKDGIQGLKNNFFMTN
LIDFSESTSAQITNKNCSFCALMKKRIPALGKCLTCGDFLCPECYQRHKFTTKTFQHETATLEELQSGKYNEKIRLNQEI
PCDEHKNTLRYFCDTCNVPVCPDCVILDHKEGHFIVKPSEAIKKRQQEIGSLLEGLDKKMTDFKQNSSLLEEEERKVDTT
QRDMSQLIRETIDNLVKKISAEGQKAQEILQTHINVRRQTLTRVRSEQEKNIALLQSSLVFCQRVISNGMEGEIVFLQEM
MRKRLSFLEAEVFDKNEIKPWTPPTLNIKTLSENPSSLEIFKFRETSLPMRPEHMTDNCMAADRIPNTAKSIPKSLTISC
PNLAEAIANEEKNTRGTNGQAGCPLQLHQKRIIDCTAADDEYESKITSVDWCDDHSFIVADEDNEKVKKYSIRGKLLQSC
KVKNVQTVACLRNMVFCGLTGGKITLIKANSIFLNIETQKYGICVPVVIGNATLNALFVSNTSLQHMDEMGNVSKSIPFA
DKTGKRVRMKPVYPHRFRDKEIVISDWSTTSSYIIRENGLTTRIKMNSNKSPSGLACDNENNIYVADYWKNEIMVLNSEC
VHIKTFKIPNVPTPKGMACSKSNSLLVSFRDGVALFQIS

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495