Gene
Gene Model ID | pfu_aug2.0_77.1_23402 |
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Locus | scaffold77.1 : 496720 ... 502778 : + |
To GenomeBrowser | scaffold77.1:496720..502778 |
Genes list of scaffold | scaffold77.1 |
Synonym | pfu_aug1.0_5941.1_02108 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_77.1_23402.t1 | 1 | 1 | zf-RING_2 | 15 | 59 | 4.1e-08 | 32.9 | 3.4e-11 | 4.1e-08 | 32.9 |
pfu_aug2.0_77.1_23402.t1 | 2 | 1 | zf-C3HC4_3 | 15 | 60 | 8.7e-06 | 25.3 | 7.0e-09 | 8.7e-06 | 25.3 |
pfu_aug2.0_77.1_23402.t1 | 3 | 1 | zf-C3HC4 | 16 | 58 | 6.1e-09 | 35.4 | 4.9e-12 | 6.1e-09 | 35.4 |
pfu_aug2.0_77.1_23402.t1 | 2 | 1 | zf-C3HC4_2 | 16 | 58 | 2.0e-08 | 34.1 | 1.6e-11 | 2.0e-08 | 34.1 |
pfu_aug2.0_77.1_23402.t1 | 2 | 1 | zf-C3HC4_4 | 16 | 58 | 1.3e-07 | 31.4 | 1.0e-10 | 1.3e-07 | 31.4 |
pfu_aug2.0_77.1_23402.t1 | 3 | 1 | zf-RING_UBOX | 16 | 56 | 4.3e-07 | 29.5 | 3.5e-10 | 4.3e-07 | 29.5 |
pfu_aug2.0_77.1_23402.t1 | 4 | 1 | zf-B_box | 30 | 43 | 2.2e-10 | 40.2 | 0.27 | 340.0 | 1.2 |
pfu_aug2.0_77.1_23402.t1 | 4 | 2 | zf-B_box | 54 | 60 | 2.2e-10 | 40.2 | 3.9 | 4800.0 | -2.5 |
pfu_aug2.0_77.1_23402.t1 | 3 | 2 | zf-RING_UBOX | 55 | 63 | 4.3e-07 | 29.5 | 0.22 | 280.0 | 1.3 |
pfu_aug2.0_77.1_23402.t1 | 2 | 2 | zf-C3HC4_3 | 94 | 128 | 8.7e-06 | 25.3 | 0.082 | 100.0 | 2.6 |
pfu_aug2.0_77.1_23402.t1 | 4 | 3 | zf-B_box | 95 | 139 | 2.2e-10 | 40.2 | 3.4e-05 | 0.042 | 13.7 |
pfu_aug2.0_77.1_23402.t1 | 3 | 2 | zf-C3HC4 | 97 | 129 | 6.1e-09 | 35.4 | 1.1 | 1400.0 | -1.0 |
pfu_aug2.0_77.1_23402.t1 | 2 | 2 | zf-C3HC4_2 | 112 | 129 | 2.0e-08 | 34.1 | 0.045 | 56.0 | 3.8 |
pfu_aug2.0_77.1_23402.t1 | 3 | 3 | zf-RING_UBOX | 113 | 127 | 4.3e-07 | 29.5 | 2.5 | 3100.0 | -2.1 |
pfu_aug2.0_77.1_23402.t1 | 2 | 2 | zf-C3HC4_4 | 114 | 126 | 1.3e-07 | 31.4 | 0.27 | 330.0 | 1.2 |
pfu_aug2.0_77.1_23402.t1 | 4 | 4 | zf-B_box | 157 | 197 | 2.2e-10 | 40.2 | 3.3e-13 | 4.0e-10 | 39.4 |
pfu_aug2.0_77.1_23402.t1 | 3 | 3 | zf-C3HC4 | 176 | 184 | 6.1e-09 | 35.4 | 8.8 | 11000.0 | -3.9 |
pfu_aug2.0_77.1_23402.t1 | 4 | 1 | NHL | 181 | 196 | 2.3e-07 | 30.3 | 4.8 | 5900.0 | -2.5 |
pfu_aug2.0_77.1_23402.t1 | 4 | 2 | NHL | 448 | 470 | 2.3e-07 | 30.3 | 0.0054 | 6.7 | 6.8 |
pfu_aug2.0_77.1_23402.t1 | 4 | 3 | NHL | 611 | 635 | 2.3e-07 | 30.3 | 5.7e-07 | 0.0007 | 19.4 |
pfu_aug2.0_77.1_23402.t1 | 4 | 4 | NHL | 654 | 667 | 2.3e-07 | 30.3 | 3.5 | 4300.0 | -2.0 |
Transcript
Transcript ID | pfu_aug2.0_77.1_23402.t1 |
---|---|
Definition | - |
>pfu_aug2.0_77.1_23402.t1 atggcggaagcaccgctatcaactctaagtaatgattttctcacatgtaccatttgtttggaaattttcaaggaaccaaa gattttatcctgtttgcactctttctgcatgaactgtttagaaaaacatttagaaaagtctaaaacaagtaacagcatcg catgtccactctgtcgtgaaatgacaattataagtaaagatgggattcagggactgaaaaataactttttcatgacgaat ctcatagacttcagtgaatcaacatcagctcagatcacaaacaaaaactgctcattctgtgcgctgatgaagaaaaggat tcctgcacttggcaagtgtctgacatgcggagacttcctttgccccgagtgttaccaacgacataagtttacaacaaaga ccttccaacatgaaactgcaacacttgaagaattgcaaagcggaaaatacaatgaaaaaataaggctgaatcaagaaatt ccgtgcgatgaacataaaaatactcttcggtatttttgtgatacatgcaatgtcccagtatgtccagactgtgtcatcct cgaccacaaagaaggacatttcatagtcaagccatcagaagcaataaagaaaaggcagcaagaaattggcagtttgctgg agggtttagacaagaaaatgactgatttcaaacaaaacagctcccttctagaagaagaggaacggaaggtcgataccact caacgcgatatgtcgcaacttattcgagaaacaatcgacaatctggtgaagaaaatttcggcagaaggtcaaaaggcaca agaaatattacaaacacacatcaacgttagaagacagacattgacgagagtaagatcagagcaagagaaaaatattgcac ttctgcaaagctctctggtgttttgtcaacgagtgataagtaatggaatggaaggggaaatagtgttccttcaggagatg atgcgtaaaagactctctttcctggaagccgaagtctttgacaaaaatgaaataaagccatggacaccacctacattaaa tataaaaacattatcagaaaatccgtcttctttagaaattttcaagttcagagaaacatcccttcctatgagaccagaac acatgacggataattgcatggcagctgatcgaattccgaacacagctaaatcaatccctaaatcattaaccatttcatgt ccaaatctagcagaggctatcgccaatgaagaaaagaatacgagaggaacgaacggacaggcaggctgtcctttacagct tcatcaaaaacgcatcattgattgcactgctgctgacgatgaatatgagtcaaagataacttctgtagactggtgcgatg atcattcctttattgttgctgatgaagacaacgaaaaggtaaagaaatacagcataagaggcaaacttttacaatcctgt aaagttaaaaacgtacaaacagttgcttgcttgcgtaatatggtattttgtggactaactggcgggaaaattacattaat caaagcaaactccatatttctcaacattgaaactcagaagtatggtatctgtgttccagtggtcataggaaatgcgacat taaatgcattatttgttagcaataccagtttgcaacacatggatgagatgggaaatgtttccaagtcaattcctttcgcg gacaaaaccggtaagcgtgtcagaatgaaaccagtatatccacatcgttttcgggacaaagaaattgtcatttctgattg gtccactacttcttcatacataatcagggaaaacggtttaacaacgcgtatcaaaatgaacagtaacaaatctccaagtg gtttggcttgtgacaatgaaaataacatatacgtcgctgactactggaagaatgaaataatggtcttaaattcagaatgt gtacacatcaagacattcaaaataccaaatgtaccaactccaaagggcatggcttgctctaaaagcaactccctacttgt atcatttagagatggagttgcgctgtttcaaatttcataa |
Protein
Protein ID | pfu_aug2.0_77.1_23402.t1 |
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Definition | - |
>pfu_aug2.0_77.1_23402.t1 MAEAPLSTLSNDFLTCTICLEIFKEPKILSCLHSFCMNCLEKHLEKSKTSNSIACPLCREMTIISKDGIQGLKNNFFMTN LIDFSESTSAQITNKNCSFCALMKKRIPALGKCLTCGDFLCPECYQRHKFTTKTFQHETATLEELQSGKYNEKIRLNQEI PCDEHKNTLRYFCDTCNVPVCPDCVILDHKEGHFIVKPSEAIKKRQQEIGSLLEGLDKKMTDFKQNSSLLEEEERKVDTT QRDMSQLIRETIDNLVKKISAEGQKAQEILQTHINVRRQTLTRVRSEQEKNIALLQSSLVFCQRVISNGMEGEIVFLQEM MRKRLSFLEAEVFDKNEIKPWTPPTLNIKTLSENPSSLEIFKFRETSLPMRPEHMTDNCMAADRIPNTAKSIPKSLTISC PNLAEAIANEEKNTRGTNGQAGCPLQLHQKRIIDCTAADDEYESKITSVDWCDDHSFIVADEDNEKVKKYSIRGKLLQSC KVKNVQTVACLRNMVFCGLTGGKITLIKANSIFLNIETQKYGICVPVVIGNATLNALFVSNTSLQHMDEMGNVSKSIPFA DKTGKRVRMKPVYPHRFRDKEIVISDWSTTSSYIIRENGLTTRIKMNSNKSPSGLACDNENNIYVADYWKNEIMVLNSEC VHIKTFKIPNVPTPKGMACSKSNSLLVSFRDGVALFQIS |