Gene
| Gene Model ID | pfu_aug2.0_77.1_23403 |
|---|---|
| Locus | scaffold77.1 : 503824 ... 526819 : - |
| To GenomeBrowser | scaffold77.1:503824..526819 |
| Genes list of scaffold | scaffold77.1 |
| Synonym | pfu_aug1.0_109.1_22004 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| high mobility group isoform 1 | GO:0005634 GO:0006259 GO:0006355 GO:0006396 GO:0006950 GO:0009653 GO:0009791 GO:0035194 GO:0044710 GO:0048513 GO:0051716 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_77.1_23403.t1 | 1 | 1 | HMG_box | 613 | 662 | 6.5e-13 | 48.7 | 2.0e-16 | 1.5e-12 | 47.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_77.1_23403.t1 | gi|524875650|ref|XP_005094550.1| | PREDICTED: uncharacterized protein LOC101857319 isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_77.1_23403.t1 | gi|524875648|ref|XP_005094549.1| | PREDICTED: uncharacterized protein LOC101857319 isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_77.1_23403.t1 | gi|676483692|ref|XP_009063106.1| | hypothetical protein LOTGIDRAFT_235519 [Lottia gigantea] | 2.0e-25 |
| pfu_aug2.0_77.1_23403.t1 | gi|662187053|ref|XP_008485203.1| | PREDICTED: transcription factor Sox-17-alpha [Diaphorina citri] | 3.0e-08 |
| pfu_aug2.0_77.1_23403.t1 | gi|357492685|ref|XP_003616631.1| | FACT complex subunit SSRP1 [Medicago truncatula] | 4.0e-07 |
Transcript
| Transcript ID | pfu_aug2.0_77.1_23403.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_77.1_23403.t1 atggatattttagaatcagtctttagaccgcctggattatctgagagatcattactgaggcatatatcaacaggaagatt tgtgtaccagccggttttctcgttgcctgatgatgatgatgaaaattcactgtcagaaatgccatttaccacttactcca ttcaatctttcgatgaaagcagcttggaagaagagaaacaaccagaaaggaaatcaaaagccactgtcacaaattttaca atgacagatcctgatgattacctaagatatacagaagtatcacatgtgaccattcccagcagtcaggagcttggtttcct tcctcctcaaacaatacggacgagtagctatatcagccagccccgtagaactgcagaaaaaacaccgtccactctcctta aaatgatggaacgtcacagagaaagtgaaagagtacggcatcacacgctgaatgagttgatgaggaatgtatgtgaaggt gtccctggttactctgatgtatctaaagaaacaaaggttgtcatgatgcagagaatcatttcatacatctgttacttaga gaatacaattacctccctttgccacgacattggtgtaaaaatcaacagtctgcgcatgtctacgaatttcctgaataatc agtggaaaagggataatgtgcacagttatacgactctgtctgcttccaagtatagacgattcgttgagccggagattata gcgattaaatgtaaaccaagtgagagaccagtacgaaggagagtggaacagttagagcaaagacagctaaagatctcctc acccaccgtggattctacaactgacaccagcagtggttatgtagatatactgacaaagaaggacaattcgacagtgtgca gtcatacaacaaggtcagacagctctcaggactccaaccatcctaccagctgtacaaagattggagacaccccacaatcc acacagcatcatgatatattgacacaagatgctgatttcagtgataatgtttgtagagaagatgtgaatgttttttgtgt gcctgaggagtttgtggacactccaacaaaatactttagctgtgatgtcatttcaacatcagacaaccttgatacgttcc ctgatccttttgacctgatgtctagtcctgtgggtaaaagacactttgggatgcttagtcccaagatggatggattgtat gcttccccgtgtggaattaaatcagatcagagagatctcaacgaaacgttagagcttggggaaaatgaaatgaagactgt atcacccgagtgtatcctacaaacaaaccttggcagtcaagatgattacgtatcaggtagctgttcaaagactttgaatg acttggtatcaaagacaggtcactcgaactcacacttgactccagggaaaacttcagtctccaccccaggaagattcctc tcaaacacgcccgtcaaaagtcccgtcattatagggaagaacaaaaggaaacagtacacgcccatgcgatcaccttttca tgatgtgacaaattatatgaattccccagaaaacgatgaactgtatggacccatttcatttgatgagcccaaaccaaaga ggatgaggttagacaatgatctaatgccagggaagtttgccagagaaagcccattagatgaagattttgtgtcatatgtg ccatacatatggaagttccacagtgccaagttcaccaaacggcaaaaagcagaacctccgacctgtctgccagtatctcc aggaaaagagaactctaatggaccagatagtttgctttcgaaaccagagaaggtagaccataggaaaaccacatggatga atggcttcatgatgttcagtcgactcaataggagatcttttatatcagccaatccaggtgtacacacatcacagatcagt aagatgatgggacatacctggagaaacatgtcagccgaggaacagttaccctacaaagagaaggctcatttatgtgctac ccgtatgaagttgagcagtccttccatgtttgatgctgaggacaaactttcattgactgactccagactgggagatgata cacctgagacacatgtagtggggagaggagatgaagatgatattaatgataaagatgaggaggagaaggatgataatgat gacagctttatgtcaacaccctggacattcagtcctctagtcaatatcctgtcacctctaccaccaactccaaaaccaca aaaggtcagataccacaatgtttatactgatcactatgattttatgtcaacaccctggacatttagtcctctagtcaata tcctgtcacctctactaccaactccaaaaccacataaggtcagataccacnggggtaggggggcattaatgttttacaaa catgacttttaa |
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Protein
| Protein ID | pfu_aug2.0_77.1_23403.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_77.1_23403.t1 MDILESVFRPPGLSERSLLRHISTGRFVYQPVFSLPDDDDENSLSEMPFTTYSIQSFDESSLEEEKQPERKSKATVTNFT MTDPDDYLRYTEVSHVTIPSSQELGFLPPQTIRTSSYISQPRRTAEKTPSTLLKMMERHRESERVRHHTLNELMRNVCEG VPGYSDVSKETKVVMMQRIISYICYLENTITSLCHDIGVKINSLRMSTNFLNNQWKRDNVHSYTTLSASKYRRFVEPEII AIKCKPSERPVRRRVEQLEQRQLKISSPTVDSTTDTSSGYVDILTKKDNSTVCSHTTRSDSSQDSNHPTSCTKIGDTPQS TQHHDILTQDADFSDNVCREDVNVFCVPEEFVDTPTKYFSCDVISTSDNLDTFPDPFDLMSSPVGKRHFGMLSPKMDGLY ASPCGIKSDQRDLNETLELGENEMKTVSPECILQTNLGSQDDYVSGSCSKTLNDLVSKTGHSNSHLTPGKTSVSTPGRFL SNTPVKSPVIIGKNKRKQYTPMRSPFHDVTNYMNSPENDELYGPISFDEPKPKRMRLDNDLMPGKFARESPLDEDFVSYV PYIWKFHSAKFTKRQKAEPPTCLPVSPGKENSNGPDSLLSKPEKVDHRKTTWMNGFMMFSRLNRRSFISANPGVHTSQIS KMMGHTWRNMSAEEQLPYKEKAHLCATRMKLSSPSMFDAEDKLSLTDSRLGDDTPETHVVGRGDEDDINDKDEEEKDDND DSFMSTPWTFSPLVNILSPLPPTPKPQKVRYHNVYTDHYDFMSTPWTFSPLVNILSPLLPTPKPHKVRYHXGRGALMFYK HDF |
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