Gene
| Gene Model ID | pfu_aug2.0_772.1_07865 |
|---|---|
| Locus | scaffold772.1 : 58996 ... 63566 : + |
| To GenomeBrowser | scaffold772.1:58996..63566 |
| Genes list of scaffold | scaffold772.1 |
| Synonym | pfu_aug1.0_70206.1_13105 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cre-octr-1 protein | GO:0004871 GO:0007165 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_772.1_07865.t1 | 1 | 1 | 7tm_1 | 60 | 127 | 2.7e-10 | 39.8 | 3.3e-14 | 4.9e-10 | 38.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_772.1_07865.t1 | gi|71987631|ref|NP_001024568.1| | OCTR-1, isoform a [Caenorhabditis elegans] | 2.0e-08 |
| pfu_aug2.0_772.1_07865.t1 | gi|71987639|ref|NP_001024569.1| | OCTR-1, isoform b [Caenorhabditis elegans] | 2.0e-08 |
| pfu_aug2.0_772.1_07865.t1 | gi|268579467|ref|XP_002644716.1| | C. briggsae CBR-TAG-24 protein [Caenorhabditis briggsae] | 3.0e-08 |
| pfu_aug2.0_772.1_07865.t1 | gi|308511001|ref|XP_003117683.1| | CRE-OCTR-1 protein [Caenorhabditis remanei] | 5.0e-08 |
| pfu_aug2.0_772.1_07865.t1 | gi|260827997|ref|XP_002608950.1| | hypothetical protein BRAFLDRAFT_59533 [Branchiostoma floridae] | 4.0e-07 |
Transcript
| Transcript ID | pfu_aug2.0_772.1_07865.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_772.1_07865.t1 atgtcagtggacgtaacaacaacaacatcaaatgtaacatcaaactttacctccggtaacatcagtcttcccaacattac cttcacagacagcatcacccaagcatatgttactggttcgttacaagcagtctctgttacatttggagccttgaattcct ttctggccattgttataaacttacttgtactagcatgtattctgctcgacaaagaactcaggaacttaacatatttctgg aatatcatatccctttgtgttgcaaacttactggcaggagttacagttattccccttagcacaaatatctaccatgtcgg aaaatggttacatggtgatgtgatttgcaaggcgtttataatgaccgactatacccagctacctcttgcggcgaccatat tgatttgttctcttctccatggttttggagagatgatcaccagtccaacaagtcgagtttggtacgccatagcaaagagt aataggttacgttatatcgtaacagcagtaccatggggtgttgctacattagacgacgtgcaagagaactttggatggga gcatggaggcttgcctgcagctttgtcggagacgacggaataa |
|
Protein
| Protein ID | pfu_aug2.0_772.1_07865.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_772.1_07865.t1 MSVDVTTTTSNVTSNFTSGNISLPNITFTDSITQAYVTGSLQAVSVTFGALNSFLAIVINLLVLACILLDKELRNLTYFW NIISLCVANLLAGVTVIPLSTNIYHVGKWLHGDVICKAFIMTDYTQLPLAATILICSLLHGFGEMITSPTSRVWYAIAKS NRLRYIVTAVPWGVATLDDVQENFGWEHGGLPAALSETTE |
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