Gene
| Gene Model ID | pfu_aug2.0_772.1_07866 |
|---|---|
| Locus | scaffold772.1 : 64023 ... 95915 : - |
| To GenomeBrowser | scaffold772.1:64023..95915 |
| Genes list of scaffold | scaffold772.1 |
| Synonym | pfu_aug1.0_8816.1_02647 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tnf receptor-associated factor 2 isoform x1 | GO:0006464 GO:0009966 GO:0016020 GO:0019899 GO:0031323 GO:0044093 GO:0044464 GO:0048584 GO:0060255 GO:0080090 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_772.1_07866.t1 | 2 | 1 | MATH | 11 | 38 | 1.8e-11 | 44.3 | 1.3 | 2300.0 | -1.3 |
| pfu_aug2.0_772.1_07866.t1 | 2 | 1 | zf-TRAF | 122 | 175 | 4.9e-17 | 62.0 | 1.5e-11 | 2.7e-08 | 34.0 |
| pfu_aug2.0_772.1_07866.t1 | 2 | 2 | zf-TRAF | 175 | 215 | 4.9e-17 | 62.0 | 2.7e-12 | 5.0e-09 | 36.4 |
| pfu_aug2.0_772.1_07866.t1 | 2 | 2 | MATH | 249 | 329 | 1.8e-11 | 44.3 | 4.4e-14 | 8.1e-11 | 42.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_772.1_07866.t1 | gi|637368573|ref|XP_008121593.1| | PREDICTED: LOW QUALITY PROTEIN: TNF receptor-associated factor 2 [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_772.1_07866.t1 | gi|504167655|ref|XP_004593492.1| | PREDICTED: TNF receptor-associated factor 2 isoform X2 [Ochotona princeps] | 0.0 |
| pfu_aug2.0_772.1_07866.t1 | gi|597735764|ref|XP_007230152.1| | PREDICTED: TNF receptor-associated factor 2-like [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_772.1_07866.t1 | gi|528479535|ref|XP_005172003.1| | PREDICTED: TNF receptor-associated factor 2 [Danio rerio] | 0.0 |
| pfu_aug2.0_772.1_07866.t1 | gi|697454807|ref|XP_009666355.1| | PREDICTED: TNF receptor-associated factor 2 isoform X1 [Struthio camelus australis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_772.1_07866.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_772.1_07866.t1 atggccgtacctgtagatcctggccctactatagagaaagggtatcctatagagatcctagtcaacaaagagtttgataa gaagtttcagtgtaatcattgcggcttgattctccgggatccgatacagagctactgtggacaccgattctgtaggaagt gtgtagagggtgttatcagttcgggcacacaggtgcgatgttcatcgtgtatagaagagggtgcggaggaagatgattac agtatcctgcgtcaggaacagatgtttccagacaatgcgctgaagaaagaaatgataaagattgacgttcagtgtataaa cccaggatgtgactggaaaggaaaattcaaaaattacgatgcacatgttgcggagtgtaaattccgccctttacaatgtc cacaatgtggaattaccatcgaaagcagtaaattacaatatcacatggccaatgagtgcccgcaacgaaaagtaaaatgc aaatattgcaacatagagataacttttgccgaaagtgaggaacattacaagaattgtccaaagtttccaatgaaatgtga agcctgtggtaaaaagaaaatcccaagagaaaagatgcagcatcacatcgagaaggaatgtacacaacaaaaagttcagt gtttaccagaatgtggagctctcgccgggacgaatgtccggagagctattgtcatacccccggtgtcggcgttggcgcct gcgtctgcgtctcatctgcgaaattttgacgctctgttatcgtggccttttacgcatcgtgtgtcgtttatgctgcttga ccagaacaacagagaacacatagttgactcgttcagacccgatcccacgagtagctcgttcaaacgaccgacgtcagaaa tgaacattgcgagcggatgcccgctcttcatgcctcaggcaaaactcgacgacccaaatctggcgtacgtcaaggacgat accatgttcataaaaattacggtggatttaactaatgtgggggttgttggcgaaggtgtagcaggcttagagacaggtgt tgtttgtgatgtggtttccatggatcctgctgatgacgtttgcaacgatttggtactggatgtcacagttgacgtaatcg gagatgatgatttgttatgcagactgtcatctgacgtcgtctgtggtgttttggctgtactgatgcttggagtctcggta gacaatgatgtggatgaagtaatactggaagcagtcgttactgttacattatcactagggaaagtattgaaagaagacag agaagatggcatagtgcttgtggaaacactggaggcagaactcaaagtatcgctaggaaacgtgttggaatatgtagtcg aaggagacgataatgtactcaatgaatctgtcgtgggcctaatcgctgtagaggtcatcgtctttgatggcgctgttgcc gaagtaagttttgtaattggtgacgcaaacggactagaagaagcagtgggcgtgaaaacactggaggcagaactcattgg agacgatgaggtagtactctgtgaatctgttgacaatacagtcgttgtagaggtcattgactttgatggttcagctgtaa acgtcagttttgtaatcgttgaatctatcgaaggagaagtcgtcatcgaggttgaagcagaatag |
|
Protein
| Protein ID | pfu_aug2.0_772.1_07866.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_772.1_07866.t1 MAVPVDPGPTIEKGYPIEILVNKEFDKKFQCNHCGLILRDPIQSYCGHRFCRKCVEGVISSGTQVRCSSCIEEGAEEDDY SILRQEQMFPDNALKKEMIKIDVQCINPGCDWKGKFKNYDAHVAECKFRPLQCPQCGITIESSKLQYHMANECPQRKVKC KYCNIEITFAESEEHYKNCPKFPMKCEACGKKKIPREKMQHHIEKECTQQKVQCLPECGALAGTNVRRAIVIPPVSALAP ASASHLRNFDALLSWPFTHRVSFMLLDQNNREHIVDSFRPDPTSSSFKRPTSEMNIASGCPLFMPQAKLDDPNLAYVKDD TMFIKITVDLTNVGVVGEGVAGLETGVVCDVVSMDPADDVCNDLVLDVTVDVIGDDDLLCRLSSDVVCGVLAVLMLGVSV DNDVDEVILEAVVTVTLSLGKVLKEDREDGIVLVETLEAELKVSLGNVLEYVVEGDDNVLNESVVGLIAVEVIVFDGAVA EVSFVIGDANGLEEAVGVKTLEAELIGDDEVVLCESVDNTVVVEVIDFDGSAVNVSFVIVESIEGEVVIEVEAE |
|