Gene
| Gene Model ID | pfu_aug2.0_772.1_07867 |
|---|---|
| Locus | scaffold772.1 : 112326 ... 138230 : + |
| To GenomeBrowser | scaffold772.1:112326..138230 |
| Genes list of scaffold | scaffold772.1 |
| Synonym | pfu_aug1.0_26736.1_55171 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| fibrinogen alpha chain | GO:0044763 GO:0048518 GO:0050794 GO:0050896 GO:0065008 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_772.1_07867.t1 | 1 | 1 | Fibrinogen_C | 100 | 308 | 4.7e-23 | 82.0 | 8.0e-26 | 2.9e-22 | 79.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_772.1_07867.t1 | gi|260781738|ref|XP_002585958.1| | hypothetical protein BRAFLDRAFT_255934 [Branchiostoma floridae] | 5.0e-15 |
| pfu_aug2.0_772.1_07867.t1 | gi|620979931|ref|XP_007670012.1| | PREDICTED: fibrinogen alpha chain [Ornithorhynchus anatinus] | 6.0e-15 |
| pfu_aug2.0_772.1_07867.t1 | gi|602661758|ref|XP_007436527.1| | PREDICTED: fibrinogen alpha chain [Python bivittatus] | 9.0e-15 |
| pfu_aug2.0_772.1_07867.t1 | gi|558109415|ref|XP_006111615.1| | PREDICTED: fibrinogen alpha chain [Pelodiscus sinensis] | 4.0e-14 |
Transcript
| Transcript ID | pfu_aug2.0_772.1_07867.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_772.1_07867.t1 atgaggcggttgttgatggcaatacttctgatttatcttgtgattaaggctcagttacctattaacaacaagaactgccc agccggcattgcaaaaagggtccgtgaaatctcagatgattatctcaacacgttttgggaacaccaacgtcttctggagg aaagagaaaagataaagaagaaatataagaaagaaagtcgggatgtaaaagaccaatacaaaccaaccattgataaaata gaaagggaaaatgcaagactaagcagcatgatagatggaatggataaatatttgattgattgcgattggtatcataaaaa agaccccgcattggagtctggtttttatgaattatcggtctatggtctggtatttacagcctattgtgagatgaggagag aggacaacgcaaagaccattatatatgcgtttgactctcggttgcgtcagacagaaaggaatatgaatcgtacttggcag gagtataaagatggatttggaaaagtcggtggcggaagtgacttctggttagggaatgaaaacctccacttgttaacaaa agatcgacctttggatgttcaaatagtttatgatacggacttcatggagttatggacgtttcttgaagaatgtacagtct tatcggaaaccaacgaatacacaatgagatgtaaattagtaatggcgcgtaaggatccaaagcctctgctaattgatgag gccgagcgactcagggaggtatttgaaaaagagacatggctaaaagggcgagacgtaatactccctgtaaacaaaaggtt ctctacctacgacaatgataacgacggaagagagattgataactgtgctgcagtcaacggaatgggttggtggtacgatg atgattgtcacattattcctcctgcttatggaaatggatattacaaattaagaatagaaatacaattcatatag |
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Protein
| Protein ID | pfu_aug2.0_772.1_07867.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_772.1_07867.t1 MRRLLMAILLIYLVIKAQLPINNKNCPAGIAKRVREISDDYLNTFWEHQRLLEEREKIKKKYKKESRDVKDQYKPTIDKI ERENARLSSMIDGMDKYLIDCDWYHKKDPALESGFYELSVYGLVFTAYCEMRREDNAKTIIYAFDSRLRQTERNMNRTWQ EYKDGFGKVGGGSDFWLGNENLHLLTKDRPLDVQIVYDTDFMELWTFLEECTVLSETNEYTMRCKLVMARKDPKPLLIDE AERLREVFEKETWLKGRDVILPVNKRFSTYDNDNDGREIDNCAAVNGMGWWYDDDCHIIPPAYGNGYYKLRIEIQFI |
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