Gene
| Gene Model ID | pfu_aug2.0_773.1_11170 |
|---|---|
| Locus | scaffold773.1 : 25476 ... 42295 : - |
| To GenomeBrowser | scaffold773.1:25476..42295 |
| Genes list of scaffold | scaffold773.1 |
| Synonym | pfu_aug1.0_4108.1_52183 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| long-chain-fatty-acid-- ligase 4 isoform x2 | GO:0005739 GO:0006629 GO:0007275 GO:0015645 GO:0016020 GO:0044763 GO:0048856 GO:0050789 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_773.1_11170.t1 | 1 | 1 | AMP-binding | 3 | 456 | 0.0 | 287.3 | 0.0 | 0.0 | 287.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_773.1_11170.t1 | gi|676425954|ref|XP_009044469.1| | hypothetical protein LOTGIDRAFT_205986 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_773.1_11170.t1 | gi|505793210|ref|XP_004606364.1| | PREDICTED: long-chain-fatty-acid--CoA ligase 4 [Sorex araneus] | 0.0 |
| pfu_aug2.0_773.1_11170.t1 | gi|345306737|ref|XP_001507836.2| | PREDICTED: long-chain-fatty-acid--CoA ligase 4 isoform X2 [Ornithorhynchus anatinus] | 0.0 |
| pfu_aug2.0_773.1_11170.t1 | gi|556984807|ref|XP_005998253.1| | PREDICTED: long-chain-fatty-acid--CoA ligase 4 isoform X2 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_773.1_11170.t1 | gi|557320999|ref|XP_006033624.1| | PREDICTED: long-chain-fatty-acid--CoA ligase 4 isoform X3 [Alligator sinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_773.1_11170.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_773.1_11170.t1 atgggagactatagatggcaaaattttgaggaaattctaactcgtgccacaaactttgggagtggacttctagccctagg ccagaaaccaaggaagaatactctgatattttctgaaacaaaagcagaatggatgattgctgctcaagcatgtttcaagt acaactttccagttgtaacactttacgcgacattgggatcagatgctattgttcatgggatcaaggaagcagaagtgtcc tatgttatcactagttcatccctcctcaataaattcaaggatatcatagataagatgccaaaggtcacacacataatata cataggtcaggagaaagctaagattccagatcagctgaagcacatcaaaatactctccatggaagaagtagagaatatag gggcagaaccagacaatattaagacacctgtaacaaagccgagaccagaggacatcgctgttatcatgtatacgagtgga tcaactggtgtccctaaaggtgttctgataagtcatgccaatttgatggctggtatgtccggacagtgtgagaaaataca gggactggggccagatgatacgtatgtaggatatctgccccttgcccatgtattagagcttagtgcagagatttcctgta taagtcatggtactagaattggatactcgtcacctcttactttgactgacaattcaagcaagataaagcgaggaagtttg ggtgatgtatcagtacttaaaccaactcttatggccagtgtaccggcaataatggacagactgtacaaaggagtgtggga aaaagtgaataaaggaagttcattatccaaggcaatgtttgaatttgcttgtgattataaacaaaaaaggttattaagtg gcatggatacacctattttgaataagataatcttttcaaaagtacgagacattctcggtggtcgagttaggatgatgctc agtggaggagctccattgtccgataagacacagagatttatgaacgtgtgtttctgctgtcctgttttacaggggtatgg cctaacagaaacatgtggagctggtacaatagctgaagtgacagacttggcaacaggcagagttggtgcgcctcttacat gctctgaattaagactaagagattggccagagggcaattatactgccaatgataaaccaaatccaagaggggagatttta cttggaggagggaatattgtcatggggtattacttgatggaagaaaaaaccaaggaagacttcacagaaataaacggagt taggtatttctgtacaggggatatcggagagatagaagatgatggttgcctgaaagttatagacaggaagaaagatcttg taaagctacaagcaggagaatatgttgctgtaggccaagtagagactgtactgacgatgcatcaactggtagatcagatc ttcctacatgcagacagcagccatgagttcaccatagcctttgtagtacccaatgagaaagcactggagaagctagcgaa ggagatgtcaatagagggtagccatgaagatctgtgtaagaataacgatctgacaaaggaagctttaaaacaaataacag aatatggaatcaaatcaaagttagagagatattgtcttccacgacatcttaagctttgtccggagccatggatgcctgat tctggtctcgttaccaacacaatgaaactcaaacgaaaatcttgtgagaaccactaccaaaaggacatcaaagtgatgta tagcaaatag |
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Protein
| Protein ID | pfu_aug2.0_773.1_11170.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_773.1_11170.t1 MGDYRWQNFEEILTRATNFGSGLLALGQKPRKNTLIFSETKAEWMIAAQACFKYNFPVVTLYATLGSDAIVHGIKEAEVS YVITSSSLLNKFKDIIDKMPKVTHIIYIGQEKAKIPDQLKHIKILSMEEVENIGAEPDNIKTPVTKPRPEDIAVIMYTSG STGVPKGVLISHANLMAGMSGQCEKIQGLGPDDTYVGYLPLAHVLELSAEISCISHGTRIGYSSPLTLTDNSSKIKRGSL GDVSVLKPTLMASVPAIMDRLYKGVWEKVNKGSSLSKAMFEFACDYKQKRLLSGMDTPILNKIIFSKVRDILGGRVRMML SGGAPLSDKTQRFMNVCFCCPVLQGYGLTETCGAGTIAEVTDLATGRVGAPLTCSELRLRDWPEGNYTANDKPNPRGEIL LGGGNIVMGYYLMEEKTKEDFTEINGVRYFCTGDIGEIEDDGCLKVIDRKKDLVKLQAGEYVAVGQVETVLTMHQLVDQI FLHADSSHEFTIAFVVPNEKALEKLAKEMSIEGSHEDLCKNNDLTKEALKQITEYGIKSKLERYCLPRHLKLCPEPWMPD SGLVTNTMKLKRKSCENHYQKDIKVMYSK |
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