Gene
| Gene Model ID | pfu_aug2.0_7771.1_06308 |
|---|---|
| Locus | scaffold7771.1 : 1 ... 3665 : - |
| To GenomeBrowser | scaffold7771.1:1..3665 |
| Genes list of scaffold | scaffold7771.1 |
| Synonym | pfu_aug1.0_43058.1_27021 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription intermediary factor 1-beta | GO:0005488 GO:0005622 GO:0019219 GO:0044260 GO:0044767 GO:0060255 GO:0090304 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_7771.1_06308.t1 | 2 | 1 | zf-B_box | 16 | 58 | 3.7e-15 | 55.5 | 1.4e-08 | 4.1e-05 | 23.3 |
| pfu_aug2.0_7771.1_06308.t1 | 2 | 2 | zf-B_box | 75 | 112 | 3.7e-15 | 55.5 | 6.2e-13 | 1.8e-09 | 37.2 |
| pfu_aug2.0_7771.1_06308.t1 | 4 | 1 | NHL | 269 | 285 | 3.0e-07 | 30.0 | 0.049 | 150.0 | 2.6 |
| pfu_aug2.0_7771.1_06308.t1 | 4 | 2 | NHL | 341 | 347 | 3.0e-07 | 30.0 | 1.0 | 3000.0 | -1.6 |
| pfu_aug2.0_7771.1_06308.t1 | 4 | 3 | NHL | 365 | 387 | 3.0e-07 | 30.0 | 1.5e-06 | 0.0044 | 16.9 |
| pfu_aug2.0_7771.1_06308.t1 | 4 | 4 | NHL | 408 | 426 | 3.0e-07 | 30.0 | 1.2e-06 | 0.0035 | 17.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_7771.1_06308.t1 | gi|524976378|ref|XP_005088010.1| | PREDICTED: transcription intermediary factor 1-beta [Mesocricetus auratus] | 2.0e-10 |
| pfu_aug2.0_7771.1_06308.t1 | gi|694977564|ref|XP_009434892.1| | PREDICTED: LOW QUALITY PROTEIN: transcription intermediary factor 1-beta [Pan troglodytes] | 3.0e-10 |
| pfu_aug2.0_7771.1_06308.t1 | gi|507578868|ref|XP_004672948.1| | 3.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_7771.1_06308.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7771.1_06308.t1 atgagtgacaacggagcctcagccattccttcccagacatttgtggagtgtggccaatgtaaagggaacgtcaacatttc atggttttgtaaaaactgcccttgctcactttgtgacacatgtgctaccgcccacaagacatctcatcaatacaaatccc acacagtcgtaccacggacatataccgtccttcgattatacggaccagcaaaattagcagaacaatgtcacatccatcca gaaaaagaaatatcatcctactgcaatgattgcggtactccgtgctgtgtgacatgtatggtgaacgatcataaacgtca tgacttttccaccatagaagacaagtacctggatgctgagaaaggcctgaatgagtattacagacagcttgataatgacg tcataccaacgcttgagaagatggaggaacaagccagggccgatgtcaaggaagatgacagccacgttgagaaagtcata gatgacattaatatttttcgcaaagatgttgttcaaaattttaatagagcatgtgatgatctcattgttcagataggtgt catatacatgaccactgcagataacaacatggcatgggttatgcattcaaggagtcctactatgtgcctgtataacgata agggtgaggtagtaaggtatgtgacagtagaaagcagtaagggcatcaaagacatggcaatcacactgtcaggggagatg atagtaacatgtaaagacatgaaagtgaggcgtgtatcagtgagtggtgagacgtctatattgatagacacggcaccatt tggttgtgaaggtgtgtgtctgactgacaaagaggagattgtagtgtgtatgtttggtctgggtgataagaaccacgtgg ctgtgcactcacctgatggacgtagtaagatacgtggaatacggggtagggacagtcaggggaaacaccttccaactgat ccttaccgtgtggtacagaatggtcaggatctgtgtgtagttagtttcatgacaaattttgtatgtgtggatgagagaga taatgtgaggtgggtgtatgacggtatggacgctaagccaggaaagtcatttcatccacgttgtatatgtgttgatcagt acaagaatgtgctgatcaccgatactgataaccactgtgtacattatatagacagggagggaggattgatacaagtgata atgacacaggaacaaataggattacagtatccttgggggatctgtgtagatgacgttacaggtcatgtctgggttggata tccttcggg |
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Protein
| Protein ID | pfu_aug2.0_7771.1_06308.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7771.1_06308.t1 MSDNGASAIPSQTFVECGQCKGNVNISWFCKNCPCSLCDTCATAHKTSHQYKSHTVVPRTYTVLRLYGPAKLAEQCHIHP EKEISSYCNDCGTPCCVTCMVNDHKRHDFSTIEDKYLDAEKGLNEYYRQLDNDVIPTLEKMEEQARADVKEDDSHVEKVI DDINIFRKDVVQNFNRACDDLIVQIGVIYMTTADNNMAWVMHSRSPTMCLYNDKGEVVRYVTVESSKGIKDMAITLSGEM IVTCKDMKVRRVSVSGETSILIDTAPFGCEGVCLTDKEEIVVCMFGLGDKNHVAVHSPDGRSKIRGIRGRDSQGKHLPTD PYRVVQNGQDLCVVSFMTNFVCVDERDNVRWVYDGMDAKPGKSFHPRCICVDQYKNVLITDTDNHCVHYIDREGGLIQVI MTQEQIGLQYPWGICVDDVTGHVWVGYPS |
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