Gene
| Gene Model ID | pfu_aug2.0_7771.1_06310 |
|---|---|
| Locus | scaffold7771.1 : 9315 ... 9915 : - |
| To GenomeBrowser | scaffold7771.1:9315..9915 |
| Genes list of scaffold | scaffold7771.1 |
| Synonym | pfu_aug1.0_29274.1_04695 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription intermediary factor 1-beta | GO:0005515 GO:0006259 GO:0006355 GO:0006464 GO:0007275 GO:0044428 GO:0044763 GO:0048523 GO:0048856 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_7771.1_06310.t1 | 2 | 1 | zf-B_box | 15 | 58 | 7.2e-16 | 57.8 | 1.7e-09 | 6.1e-06 | 26.0 |
| pfu_aug2.0_7771.1_06310.t1 | 2 | 2 | zf-B_box | 74 | 112 | 7.2e-16 | 57.8 | 2.9e-13 | 1.1e-09 | 38.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_7771.1_06310.t1 | gi|119593011|gb|EAW72605.1| | tripartite motif-containing 28, isoform CRA_a [Homo sapiens] | 3.0e-09 |
| pfu_aug2.0_7771.1_06310.t1 | gi|544514264|ref|XP_005590680.1| | PREDICTED: transcription intermediary factor 1-beta [Macaca fascicularis] | 3.0e-09 |
| pfu_aug2.0_7771.1_06310.t1 | gi|634893282|ref|XP_007955203.1| | PREDICTED: transcription intermediary factor 1-beta [Orycteropus afer afer] | 4.0e-09 |
| pfu_aug2.0_7771.1_06310.t1 | gi|584077769|ref|XP_006759041.1| | PREDICTED: transcription intermediary factor 1-beta [Myotis davidii] | 4.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_7771.1_06310.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7771.1_06310.t1 atgagtgacaacggagcctcagcgattcctccccagacatttatggagtgtggccaatgtaaagggaacgtcaacatctc atggttttgtaagaactgtccttgctcactttgtgacacatgtgctaccgcccacaagacatctcatcaatacaaatccc actcagtcgtgcaattgacatacaccgtcctccgattgtacggtccggcaaaattagcagaacagtgtcacatccatcca gaaaaagaaatattatcttactgcaatgattgcggcattccatgctgtgtcacgtgtatggtgaacgatcataaacgtca cgacttctccaccatagaagacaagtacctggatgcagaaaaaggcctgaatgagtactacagacagctggacaccgaca tcagaccaacgcttgaaagctag |
|
Protein
| Protein ID | pfu_aug2.0_7771.1_06310.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_7771.1_06310.t1 MSDNGASAIPPQTFMECGQCKGNVNISWFCKNCPCSLCDTCATAHKTSHQYKSHSVVQLTYTVLRLYGPAKLAEQCHIHP EKEILSYCNDCGIPCCVTCMVNDHKRHDFSTIEDKYLDAEKGLNEYYRQLDTDIRPTLES |
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