Gene
| Gene Model ID | pfu_aug2.0_78.1_26802 |
|---|---|
| Locus | scaffold78.1 : 71838 ... 78405 : - |
| To GenomeBrowser | scaffold78.1:71838..78405 |
| Genes list of scaffold | scaffold78.1 |
| Synonym | pfu_aug1.0_11775.1_68402 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_78.1_26802.t1 | 2 | 1 | TRAM_LAG1_CLN8 | 136 | 264 | 6.4e-06 | 25.8 | 8.5e-10 | 1.3e-05 | 24.8 |
| pfu_aug2.0_78.1_26802.t1 | 2 | 2 | TRAM_LAG1_CLN8 | 239 | 286 | 6.4e-06 | 25.8 | 0.14 | 2000.0 | -1.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_78.1_26802.t1 | gi|291232658|ref|XP_002736276.1| | PREDICTED: uncharacterized protein LOC100370515 [Saccoglossus kowalevskii] | 3.0e-28 |
| pfu_aug2.0_78.1_26802.t1 | gi|260798710|ref|XP_002594343.1| | hypothetical protein BRAFLDRAFT_65194 [Branchiostoma floridae] | 4.0e-25 |
| pfu_aug2.0_78.1_26802.t1 | gi|390358967|ref|XP_003729373.1| | PREDICTED: uncharacterized protein LOC100891224 [Strongylocentrotus purpuratus] | 1.0e-20 |
| pfu_aug2.0_78.1_26802.t1 | gi|291241224|ref|XP_002740514.1| | PREDICTED: uncharacterized protein LOC100379037 [Saccoglossus kowalevskii] | 2.0e-20 |
| pfu_aug2.0_78.1_26802.t1 | gi|156341475|ref|XP_001620772.1| | hypothetical protein NEMVEDRAFT_v1g222725 [Nematostella vectensis] | 1.0e-16 |
Transcript
| Transcript ID | pfu_aug2.0_78.1_26802.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_78.1_26802.t1 atgtttgggaagtgcttggggacattttggaatattctccaagacatcggaagcacaatgtttttcgaagttagcgagct tctggtgatttcgttgactgtgaatatatgtatcgctatatatgcagggacattaagactgcagaaaaattgtataggaa aatgttgttgtaaaaacgagaactggttcatcatactctgccggacttttcagaataagcaatatattctgtccaaattt gtcacagagcagttcacggcgtgggttctatccgcggcaggcgtcggtgctttgttcacttccggtgtaatatatcgtcc atttgacggcacatttcccgaaccatacgcacaattcatacccatccttctctccatcaatatcggacgttacttctaca tgctcgtccaggacctctacatccttcatttaatcgaagcatctaaatatagaacggacaccatccatcatgttgttgcg ttcgtctgctattgtgttttcctcgttttcaagcagaattatctgttggccataattggaatcacgatggaactaagcac cacaattatagaaatttcaaaaattaccaaagaactcggaaaaacgaagaccagattttaccaaagacttactcttatca gttgtatttccactattacctttcggggagtagttccggtgacgtttttgattattgcaatgttcttgcagactccgttc acaatgcactatacagtattgacaatattttttctgagcataatatttttctcggtaattaatgtttggttgattttaac gacaattcaaaggttagtgaaatcattttgtaacaaatctagtcttttccgacgcacggaaagttctagtcacgtgccaa cgtttcaagactcgacagcttcgaatgactaccagttctttacgaaaaacaacctcggttacatgaggcgatatgataac aaaaacctgtgctatgttgaagaagaaaaattgaatacaaccaagaaaatgacagcgaaggacaatataccaacagctgg gtttcccgtaaacatgcaccaagcaagatcattggaagacattgactcgaatgagacttccgtcgaatctcaaaataatt catcagacaatagtgtgccggcagcaagcaactcttacattgttcgttttgaacgggaaagaagtagcgaccgatcaagt tcatcgggacgcgcattaatctctgaaacttctcattccgccgcgtctgcatcttcatcacaggaaactggagctgtaaa tgtataa |
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Protein
| Protein ID | pfu_aug2.0_78.1_26802.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_78.1_26802.t1 MFGKCLGTFWNILQDIGSTMFFEVSELLVISLTVNICIAIYAGTLRLQKNCIGKCCCKNENWFIILCRTFQNKQYILSKF VTEQFTAWVLSAAGVGALFTSGVIYRPFDGTFPEPYAQFIPILLSINIGRYFYMLVQDLYILHLIEASKYRTDTIHHVVA FVCYCVFLVFKQNYLLAIIGITMELSTTIIEISKITKELGKTKTRFYQRLTLISCISTITFRGVVPVTFLIIAMFLQTPF TMHYTVLTIFFLSIIFFSVINVWLILTTIQRLVKSFCNKSSLFRRTESSSHVPTFQDSTASNDYQFFTKNNLGYMRRYDN KNLCYVEEEKLNTTKKMTAKDNIPTAGFPVNMHQARSLEDIDSNETSVESQNNSSDNSVPAASNSYIVRFERERSSDRSS SSGRALISETSHSAASASSSQETGAVNV |
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